Bra001209 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra001209 T253222_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001209.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo3g060720 Brassica oleracea Bo3g060720 I 0.979
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.917
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.917
AGL91 Arabidopsis thaliana AT3G66656 D 0.917
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.896
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.896
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.896
Bo4g182590 Brassica oleracea Bo4g182590 I 0.812
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.812
Bra021910 Brassica rapa Bra021910 I 0.812
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.792
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.792
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.792
AGL29 Arabidopsis thaliana AT2G34440 I 0.792
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.792
Ca_24185 Cicer arietinum Ca_24185 I 0.750
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.729
Ca_05023 Cicer arietinum Ca_05023 I 0.729
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.729
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.708
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.708