TF Information

Bra006051 *(Brassica rapa)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	Bra006051	T253239_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FLC M06990_2.00	Arabidopsis thaliana	WWDMYNDWWWWGGAAASW	WSTTTCCWWWWHNRKHWW	Dap-seq OMalley et al.(2016) AGL25_col_a	0.958	0.958
FLC M06991_2.00	Arabidopsis thaliana	WCYHAAAAWGGAAAS	STTTCCWTTTTDRGW	Dap-seq OMalley et al.(2016) AGL25_colamp_a	0.958	0.958
FLC M08147_2.00	Arabidopsis thaliana	NNWWDCYVAAAWWRGAAAVHH	DDBTTTCYWWTTTBRGHWWNN	ChIP-seq Mathelier et al.(2014) MA0558.1	0.958	0.958
AGL27 M08145_2.00	Arabidopsis thaliana	MCMAAAATRGAAAB	VTTTCYATTTTKGK	ChIP-seq Mathelier et al.(2014) MA1012.1	0.792	0.792
AGL15 M06992_2.00	Arabidopsis thaliana	WNTTWCCHAAWDWRGAAAN	NTTTCYWHWTTDGGWAANW	Dap-seq OMalley et al.(2016) AGL15_col_a	0.729	0.729
AGL15 M06993_2.00	Arabidopsis thaliana	DNTTWCCHAAWDDRGAAANHH	DDNTTTCYHHWTTDGGWAANH	Dap-seq OMalley et al.(2016) AGL15_colamp_a	0.729	0.729
AGL6 M06986_2.00	Arabidopsis thaliana	TTWCCHAAAAWRGWAANWW	WWNTTWCYWTTTTDGGWAA	Dap-seq OMalley et al.(2016) AGL6_col_a	0.729	0.729
AGL15 M10927_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_01	0.729	0.729
AGL15 M10928_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_02	0.729	0.729
MAD17_ORYSJ M10961_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS17_01	0.729	0.729
MADS50 M10968_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS50_01	0.729	0.729
MADS6 M10967_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS6_01	0.729	0.729
Q9LEI3_HORVU M10985_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM3_01	0.708	0.708
Q9LEH9_HORVU M10983_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM9_01	0.708	0.708
Q9ATE2_PETHY M11007_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP29_01	0.708	0.708
Q9ATF1_PETHY M11013_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP9_01	0.708	0.708
O82699_MALDO M11022_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_01	0.708	0.708
MADS18 M10973_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS18_01	0.708	0.708
Q9ST54_MALDO M11029_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_04	0.708	0.708
O82697_MALDO M11020_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS7_01	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*