Bra006549 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra006549 T253242_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.958 0.958
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.729 0.729
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
Q9LEI3_HORVU
M10985_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM3_01 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006549.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g020730 Brassica oleracea Bo2g020730 I 1.000
Bra020093 Brassica rapa Bra020093 I 1.000
Bo3g014100 Brassica oleracea Bo3g014100 I 1.000
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.979
Bo9g152080 Brassica oleracea Bo9g152080 I 0.979
Bra002285 Brassica rapa Bra002285 I 0.979
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.979
Bo3g010390 Brassica oleracea Bo3g010390 I 0.979
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.979
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.979
PI Arabidopsis thaliana AT5G20240 D 0.958
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.958
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.792
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.792
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.771
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.771
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.771
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.771
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.771
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.771
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.771
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.771
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.750
TCM_035212 Theobroma cacao TCM_035212 I 0.750
Ca_13111 Cicer arietinum Ca_13111 I 0.750
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.750
29648.m001978 Ricinus communis 29648.m001978 I 0.750
Pm004718 Prunus mume Pm004718 I 0.750
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.729
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
Cla023547 Citrullus lanatus Cla023547 I 0.729
Thhalv10004769m.g Eutrema salsugineum Thhalv10004769m.g I 0.729
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.729
Si030896m.g Setaria italica Si030896m.g I 0.729
AGL8 Arabidopsis lyrata scaffold_802730.1 I 0.729
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.729
Ca_24649 Cicer arietinum Ca_24649 I 0.729
Carubv10027017m.g Capsella rubella Carubv10027017m.g I 0.729
AGL8 Arabidopsis thaliana AT5G60910 I 0.729
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.729
Bostr.26833s0146 Boechera stricta Bostr.26833s0146 I 0.729
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.729
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.729
PI Vitis vinifera VIT_18s0001g01760 I 0.729
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.729
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.729
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.729
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.729
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.729
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.729
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.729
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.729
Bra029347 Brassica rapa Bra029347 I 0.729
cassava29331.valid.m1 Manihot esculenta cassava29331.valid.m1 I 0.708
Cucsa.113430 Cucumis sativus Cucsa.113430 I 0.708
cassava10810.m1 Manihot esculenta cassava10810.m1 I 0.708
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.708
Carubv10018408m.g Capsella rubella Carubv10018408m.g I 0.708
Cagra.2834s0001 Capsella grandiflora Cagra.2834s0001 I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
cassava40221.m1 Manihot esculenta cassava40221.m1 I 0.708
30138.m003939 Ricinus communis 30138.m003939 I 0.708
cassava9991.m1 Manihot esculenta cassava9991.m1 I 0.708
mgf007109m Mimulus guttatus mgf007109m I 0.708
Bostr.0556s0620 Boechera stricta Bostr.0556s0620 I 0.708
Pm025026 Prunus mume Pm025026 I 0.708
Lus10004637.g Linum usitatissimum Lus10004637.g I 0.708
SapurV1A.0072s0360 Salix purpurea SapurV1A.0072s0360 I 0.708
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.708
Pavir.Bb03293 Panicum virgatum Pavir.Bb03293 I 0.708
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.708
Pavir.Ba00457 Panicum virgatum Pavir.Ba00457 I 0.708
Pavir.Ba03990 Panicum virgatum Pavir.Ba03990 I 0.708
SapurV1A.0323s0180 Salix purpurea SapurV1A.0323s0180 I 0.708
SapurV1A.0884s0020 Salix purpurea SapurV1A.0884s0020 I 0.708
LjT13A22.110.nc Lotus japonicus LjT13A22.110.nc I 0.708
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.708
LjT09J10.60.nc Lotus japonicus LjT09J10.60.nc I 0.708
PK29837.1 Cannabis sativa PK29837.1 I 0.708
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.708
PK14825.1 Cannabis sativa PK14825.1 I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708
orange1.1g035470m.g Citrus sinensis orange1.1g035470m.g I 0.708
gene13356-v1.0-hybrid Fragaria vesca gene13356-v1.0-hybrid I 0.708
gene26119-v1.0-hybrid Fragaria vesca gene26119-v1.0-hybrid I 0.708
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.708
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.708
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.708
Eucgr.K02547 Eucalyptus grandis Eucgr.K02547 I 0.708
Gorai.001G075800 Gossypium raimondii Gorai.001G075800 I 0.708
Gorai.003G103000 Gossypium raimondii Gorai.003G103000 I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.708
Lus10026679.g Linum usitatissimum Lus10026679.g I 0.708
Lus10021140.g Linum usitatissimum Lus10021140.g I 0.708
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.708
Lus10007983.g Linum usitatissimum Lus10007983.g I 0.708
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
Traes_2BL_26F24E716 Triticum aestivum Traes_2BL_26F24E716 I 0.708
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.708
OB07G10630 Oryza brachyantha OB07G10630 I 0.708
OB07G27140 Oryza brachyantha OB07G27140 I 0.708
MLOC_61901 Hordeum vulgare MLOC_61901 D 0.708
GSMUA_Achr8G04330_001 Musa acuminata GSMUA_Achr8G04330_001 I 0.708
GRMZM2G148693 Zea mays GRMZM2G148693 I 0.708
GSMUA_Achr10G06580_001 Musa acuminata GSMUA_Achr10G06580_001 I 0.708
GSMUA_Achr2G13650_001 Musa acuminata GSMUA_Achr2G13650_001 I 0.708
OBART07G00700 Oryza barthii OBART07G00700 I 0.708
OBART07G21550 Oryza barthii OBART07G21550 I 0.708
OMERI07G17960 Oryza meridionalis OMERI07G17960 I 0.708
ONIVA01G47560 Oryza nivara ONIVA01G47560 I 0.708
ONIVA07G20220 Oryza nivara ONIVA07G20220 I 0.708
OMERI07G00180 Oryza meridionalis OMERI07G00180 I 0.708
OLONG_015048 Oryza longistaminata OLONG_015048 I 0.708
OGLUM07G00660 Oryza glumaepatula OGLUM07G00660 I 0.708
OGLUM07G21410 Oryza glumaepatula OGLUM07G21410 I 0.708
GRMZM2G072582 Zea mays GRMZM2G072582 I 0.708
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.708
Bo2g149440 Brassica oleracea Bo2g149440 I 0.708
Bo2g161210 Brassica oleracea Bo2g161210 I 0.708
Bo4g024840 Brassica oleracea Bo4g024840 I 0.708
BGIOSGA026097 Oryza indica BGIOSGA026097 I 0.708
BGIOSGA024961 Oryza indica BGIOSGA024961 I 0.708
AMTR_s00047p00181740 Amborella trichopoda AMTR_s00047p00181740 I 0.708
AGL79 Arabidopsis thaliana AT3G30260 I 0.708
Bo9g009030 Brassica oleracea Bo9g009030 I 0.708
Bra004927 Brassica rapa Bra004927 I 0.708
GLYMA01G08150 Glycine max GLYMA01G08150 I 0.708
GLYMA06G22650 Glycine max GLYMA06G22650 I 0.708
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.708
F775_52406 Aegilops tauschii F775_52406 I 0.708
Bra036201 Brassica rapa Bra036201 I 0.708
Bra020742 Brassica rapa Bra020742 I 0.708
Bra035952 Brassica rapa Bra035952 I 0.708
OPUNC07G00470 Oryza punctata OPUNC07G00470 I 0.708
OPUNC07G20110 Oryza punctata OPUNC07G20110 I 0.708
TCM_011475 Theobroma cacao TCM_011475 I 0.708
TCM_014345 Theobroma cacao TCM_014345 I 0.708
Traes_2AL_20C2D79E1 Triticum aestivum Traes_2AL_20C2D79E1 I 0.708
Solyc05g056620.1 Solanum lycopersicum Solyc05g056620.1 I 0.708
Solyc02g065730.1 Solanum lycopersicum Solyc02g065730.1 I 0.708
Si010898m.g Setaria italica Si010898m.g I 0.708
Si030802m.g Setaria italica Si030802m.g I 0.708
AGL79 Arabidopsis lyrata Al_scaffold_0005_914 I 0.708
Traes_2BS_4818EA1FF Triticum aestivum Traes_2BS_4818EA1FF I 0.708
AGL8 Vitis vinifera VIT_17s0000g04990 I 0.708
Ca_12381 Cicer arietinum Ca_12381 I 0.708
Ca_13222 Cicer arietinum Ca_13222 I 0.708
VIT_01s0011g00100 Vitis vinifera VIT_01s0011g00100 I 0.708
TRIUR3_21876 Triticum urartu TRIUR3_21876 I 0.708
Traes_2DL_903A29CBA Triticum aestivum Traes_2DL_903A29CBA I 0.708
TRIUR3_20925 Triticum urartu TRIUR3_20925 I 0.708
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.708
Sb02g001090 Sorghum bicolor Sb02g001090 I 0.708
MADS15 Oryza sativa OS07G0108900 D 0.708
MADS18 Oryza sativa OS07G0605200 D 0.708
PGSC0003DMG400026563 Solanum tuberosum PGSC0003DMG400026563 I 0.708
ORUFI07G22480 Oryza rufipogon ORUFI07G22480 I 0.708
ORUFI07G00610 Oryza rufipogon ORUFI07G00610 I 0.708
ORGLA07G0005200 Oryza glaberrima ORGLA07G0005200 I 0.708
ORGLA07G0222800 Oryza glaberrima ORGLA07G0222800 I 0.708
PGSC0003DMG400028358 Solanum tuberosum PGSC0003DMG400028358 I 0.708
POPTR_0004s11430 Populus trichocarpa POPTR_0004s11430 I 0.708
Q41829_MAIZE Zea mays Q41829_MAIZE D 0.708
Q9FR84_MAIZE Zea mays Q9FR84_MAIZE D 0.708
Q9LEI3_HORVU Hordeum vulgare Q9LEI3_HORVU D 0.708
PRUPE_ppa010308mg Prunus persica PRUPE_ppa010308mg I 0.708
POPTR_0012s05950 Populus trichocarpa POPTR_0012s05950 I 0.708
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.708
POPTR_0010s16390 Populus trichocarpa POPTR_0010s16390 I 0.708
Cla018825 Citrullus lanatus Cla018825 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705