Bra016544 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra016544 T253287_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016544.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.875
Pm024895 Prunus mume Pm024895 I 0.812
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.875
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.729
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.854
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.854
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.729
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.729
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.833
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.729
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.896
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.729
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.729
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.854
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.771
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.804
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.812
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.854
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.854
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.851
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.792
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.729
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.761
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.938
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
PK03147.1 Cannabis sativa PK03147.1 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.833
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.854
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.792
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.729
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.854
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.729
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.729
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.833
MDP0000146231 Malus domestica MDP0000146231 I 0.750
MDP0000146415 Malus domestica MDP0000146415 I 0.800
MDP0000147667 Malus domestica MDP0000147667 I 0.771
MDP0000193129 Malus domestica MDP0000193129 I 0.833
MDP0000773068 Malus domestica MDP0000773068 I 0.800
MDP0000919323 Malus domestica MDP0000919323 I 0.800
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
Pm006479 Prunus mume Pm006479 I 0.804
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.761
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.875
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.870
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.771
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.787
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.792
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.750
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.875
Bo8g068060 Brassica oleracea Bo8g068060 I 1.000
F775_13266 Aegilops tauschii F775_13266 I 0.804
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.729
Bra031049 Brassica rapa Bra031049 I 1.000
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
AGL30 Arabidopsis thaliana AT2G03060 I 0.761
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 1.000
Bra004393 Brassica rapa Bra004393 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.739
Bra025685 Brassica rapa Bra025685 I 0.917
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.729
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.750
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.804
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.804
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.812
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.804
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.804
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.848
TCM_014051 Theobroma cacao TCM_014051 I 0.875
TCM_011687 Theobroma cacao TCM_011687 I 0.761
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.729
Ca_16376 Cicer arietinum Ca_16376 I 0.739
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.804
Cla018884 Citrullus lanatus Cla018884 I 0.771
Cla010361 Citrullus lanatus Cla010361 I 0.792
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.833
Ca_18082 Cicer arietinum Ca_18082 I 0.729
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.717
Bo9g072860 Brassica oleracea Bo9g072860 N 0.717
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.708
Ciclev10010259m.g Citrus clementina Ciclev10010259m.g N 0.717
Si028357m.g Setaria italica Si028357m.g N 0.761
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.708
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.708
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.761
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.761
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.761
OBART11G21780 Oryza barthii OBART11G21780 N 0.708
OS11G0658700 Oryza sativa OS11G0658700 N 0.708
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.702
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.729
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.750
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.761
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.717
Gorai.010G096200 Gossypium raimondii Gorai.010G096200 N 0.708