CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra020600
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra020600
T253306_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra020600.1-P
MADS box
7
60
KRKIEIKKRETKEQRAVAYSKRRKTLFSKSAELCCLSGANIAVFVTSPGDKPNV
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo2g155050
Brassica oleracea
Bo2g155050
N
0.957
Thhalv10015516m.g
Eutrema salsugineum
Thhalv10015516m.g
N
0.766
AGL39
Arabidopsis thaliana
AT5G27130
N
0.723
scaffold_501175.1
Arabidopsis lyrata
scaffold_501175.1
N
0.711
Cagra.6165s0001
Capsella grandiflora
Cagra.6165s0001
N
0.708
Carubv10001421m.g
Capsella rubella
Carubv10001421m.g
N
0.708