CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra024350
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra024350
T253315_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.872
0.872
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.872
0.872
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.872
0.872
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.872
0.872
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra024350.1-P
MADS box
10
56
RIENKSSRQVTFCKRRNGLIEKARQLSVLCESSVAVLVVSATGKLYN
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g100570
Brassica oleracea
Bo3g100570
I
1.000
Bra031888
Brassica rapa
Bra031888
I
0.915
Bo2g166500
Brassica oleracea
Bo2g166500
I
0.894
Bra031886
Brassica rapa
Bra031886
I
0.894
Bra028599
Brassica rapa
Bra028599
I
0.894
Bra024351
Brassica rapa
Bra024351
I
0.894
fgenesh2_kg.8__2543__AT5G65050.2
Arabidopsis lyrata
fgenesh2_kg.8__2543__AT5G65050.2
I
0.894
FLC
Arabidopsis lyrata
scaffold_601028.1
I
0.872
Carubv10020979m.g
Capsella rubella
Carubv10020979m.g
I
0.872
Thhalv10014726m.g
Eutrema salsugineum
Thhalv10014726m.g
I
0.872
Cagra.1085s0045
Capsella grandiflora
Cagra.1085s0045
I
0.872
Cagra.0450s0030
Capsella grandiflora
Cagra.0450s0030
I
0.872
Bostr.0568s0285
Boechera stricta
Bostr.0568s0285
I
0.872
Bostr.18351s0063
Boechera stricta
Bostr.18351s0063
I
0.872
Bra009055
Brassica rapa
Bra009055
I
0.872
MAF1
Arabidopsis lyrata
fgenesh2_kg.2__2000__AT1G77080.2
I
0.872
FLC
Arabidopsis thaliana
AT5G10140
D
0.872
AGL31
Arabidopsis thaliana
AT5G65050
I
0.872
AGL27
Arabidopsis thaliana
AT1G77080
D
0.872
Bo01054s010
Brassica oleracea
Bo01054s010
I
0.872
Bostr.13175s0088
Boechera stricta
Bostr.13175s0088
I
0.854
Cagra.0917s0081
Capsella grandiflora
Cagra.0917s0081
I
0.851
Bo3g100540
Brassica oleracea
Bo3g100540
I
0.851
fgenesh2_kg.233__4__AT5G65050.3
Arabidopsis lyrata
fgenesh2_kg.233__4__AT5G65050.3
I
0.851
MAF5
Arabidopsis thaliana
AT5G65080
I
0.851
Bo9g173370
Brassica oleracea
Bo9g173370
I
0.851
Bra031884
Brassica rapa
Bra031884
I
0.851
Cagra.0917s0080
Capsella grandiflora
Cagra.0917s0080
I
0.830
Bra006051
Brassica rapa
Bra006051
I
0.830
Bo9g173400
Brassica oleracea
Bo9g173400
I
0.830
Thhalv10004949m.g
Eutrema salsugineum
Thhalv10004949m.g
I
0.830
Bo13628s010
Brassica oleracea
Bo13628s010
I
0.830
MAF4
Arabidopsis thaliana
AT5G65070
I
0.812
MAF4
Arabidopsis lyrata
Al_scaffold_0008_3055
I
0.812
Bra022771
Brassica rapa
Bra022771
I
0.812
Cagra.0917s0078
Capsella grandiflora
Cagra.0917s0078
I
0.809
MAF3
Arabidopsis thaliana
AT5G65060
I
0.809
Carubv10028173m.g
Capsella rubella
Carubv10028173m.g
I
0.809
Bo3g024250
Brassica oleracea
Bo3g024250
I
0.809
Bo3g005470
Brassica oleracea
Bo3g005470
I
0.787
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
Thhalv10005413m.g
Eutrema salsugineum
Thhalv10005413m.g
I
0.745
POPTR_0003s16840
Populus trichocarpa
POPTR_0003s16840
I
0.723
POPTR_0003s16870
Populus trichocarpa
POPTR_0003s16870
I
0.723
POPTR_0001s13660
Populus trichocarpa
POPTR_0001s13660
I
0.708
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.708
SapurV1A.0228s0130
Salix purpurea
SapurV1A.0228s0130
I
0.702
MDP0000144516
Malus domestica
MDP0000144516
I
0.702
MDP0000135652
Malus domestica
MDP0000135652
I
0.702
SapurV1A.0068s0650
Salix purpurea
SapurV1A.0068s0650
I
0.702
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.702
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.700