Bra024792 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra024792 T253318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024792.1-P MADS box 10 55

Links

Other MADS box family TFs
Other Brassica rapa TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.804
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.717
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.848
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.848
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo7g080890 Brassica oleracea Bo7g080890 I 1.000
Bo8g068060 Brassica oleracea Bo8g068060 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.739
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.783
Bra004393 Brassica rapa Bra004393 I 0.739
Bra016544 Brassica rapa Bra016544 I 0.739
Bra017404 Brassica rapa Bra017404 I 0.870
Bra025685 Brassica rapa Bra025685 I 0.717
Bra031049 Brassica rapa Bra031049 I 0.739
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.826
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.761
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.761
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.826
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.717
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.783
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.783
Ca_16376 Cicer arietinum Ca_16376 I 0.826
Ca_18082 Cicer arietinum Ca_18082 I 0.826
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.826
Cla010361 Citrullus lanatus Cla010361 I 0.783
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.761
F775_13266 Aegilops tauschii F775_13266 I 0.739
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.761
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.739
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.761
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.745
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.826
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.804
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.804
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.761
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.783
MDP0000146231 Malus domestica MDP0000146231 I 0.826
MDP0000146415 Malus domestica MDP0000146415 I 0.867
MDP0000147667 Malus domestica MDP0000147667 I 0.848
MDP0000193129 Malus domestica MDP0000193129 I 0.717
MDP0000773068 Malus domestica MDP0000773068 I 0.867
MDP0000919323 Malus domestica MDP0000919323 I 0.867
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.826
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.826
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.761
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.723
PK03147.1 Cannabis sativa PK03147.1 I 0.826
Pm006479 Prunus mume Pm006479 I 0.826
Pm024895 Prunus mume Pm024895 I 0.717
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.826
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.848
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.717
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.826
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.804
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.826
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.739
TCM_011687 Theobroma cacao TCM_011687 I 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.848
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.717
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.739
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.739
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.739
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.739