CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra031864
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra031864
T253349_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL78
M10932_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT5G65330_01
0.723
0.723
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra031864.1-P
MADS box
7
53
SSSNSLAATSLSNRLKTIFKKASELSILCQVAVSVIYYGPNGDLKTW
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo00615s090
Brassica oleracea
Bo00615s090
I
0.957
Bostr.3751s0031
Boechera stricta
Bostr.3751s0031
I
0.830
Bostr.3751s0039
Boechera stricta
Bostr.3751s0039
I
0.812
Thhalv10005313m.g
Eutrema salsugineum
Thhalv10005313m.g
I
0.809
Bostr.3751s0043
Boechera stricta
Bostr.3751s0043
I
0.809
Bostr.3751s0030
Boechera stricta
Bostr.3751s0030
I
0.792
Bostr.10058s0014
Boechera stricta
Bostr.10058s0014
I
0.787
Bostr.3751s0025
Boechera stricta
Bostr.3751s0025
I
0.771
Al_scaffold_0007_3741
Arabidopsis lyrata
Al_scaffold_0007_3741
I
0.745
AGL77
Arabidopsis thaliana
AT5G38740
I
0.745
AGL76
Arabidopsis thaliana
AT5G40120
I
0.745
AGL81
Arabidopsis thaliana
AT5G39750
I
0.745
AGL52
Arabidopsis thaliana
AT4G11250
I
0.745
fgenesh2_kg.7__3412__AT5G41200.1
Arabidopsis lyrata
fgenesh2_kg.7__3412__AT5G41200.1
I
0.739
Thhalv10028282m.g
Eutrema salsugineum
Thhalv10028282m.g
I
0.739
scaffold_704060.1
Arabidopsis lyrata
scaffold_704060.1
I
0.739
Thhalv10028184m.g
Eutrema salsugineum
Thhalv10028184m.g
I
0.733
fgenesh2_kg.8__2584__AT5G65330.1
Arabidopsis lyrata
fgenesh2_kg.8__2584__AT5G65330.1
I
0.729
AGL75
Arabidopsis thaliana
AT5G41200
I
0.727
AGL98
Arabidopsis thaliana
AT5G39810
I
0.723
Bostr.0568s0255
Boechera stricta
Bostr.0568s0255
I
0.717
AGL78
Arabidopsis thaliana
AT5G65330
D
0.708
AGL51
Arabidopsis thaliana
AT4G02235
I
0.708
Carubv10007591m.g
Capsella rubella
Carubv10007591m.g
I
0.702