Bra032057 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra032057 T253354_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032057.1-P MADS box 18 65

Links

Other MADS box family TFs
Other Brassica rapa TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra007829 Brassica rapa Bra007829 N 0.979
Bo8g099550 Brassica oleracea Bo8g099550 N 0.979
Bo4g157220 Brassica oleracea Bo4g157220 N 0.979
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.938
AGL61 Arabidopsis thaliana AT2G24840 N 0.938
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.938
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.938
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.917
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.917
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.917
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.875
Bra026764 Brassica rapa Bra026764 N 0.833
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.792
29613.m000367 Ricinus communis 29613.m000367 N 0.792
30099.m001671 Ricinus communis 30099.m001671 N 0.792
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.771
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
MDP0000168914 Malus domestica MDP0000168914 N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Bo5g113750 Brassica oleracea Bo5g113750 N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.750
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.750
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
TCM_006323 Theobroma cacao TCM_006323 N 0.750
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.729
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.729
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
Bra038225 Brassica rapa Bra038225 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.729
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
MDP0000434703 Malus domestica MDP0000434703 I 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.729
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
TCM_006325 Theobroma cacao TCM_006325 N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
Pm021018 Prunus mume Pm021018 N 0.729
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
30099.m001672 Ricinus communis 30099.m001672 N 0.729
Pm030655 Prunus mume Pm030655 I 0.729
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.729
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.729
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.729
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.729
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.708
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.708
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.708
MDP0000278770 Malus domestica MDP0000278770 N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
Pm021071 Prunus mume Pm021071 N 0.708
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
29693.m002042 Ricinus communis 29693.m002042 N 0.708
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
Pm016629 Prunus mume Pm016629 N 0.708
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702