CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra032057
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra032057
T253354_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra032057.1-P
MADS box
18
65
RIKKETHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVYSPAKKPFSF
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
150 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra007829
Brassica rapa
Bra007829
N
0.979
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.979
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.979
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.938
AGL61
Arabidopsis thaliana
AT2G24840
N
0.938
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.938
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.938
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.917
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.917
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.917
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.875
Bra026764
Brassica rapa
Bra026764
N
0.833
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.812
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.792
29613.m000367
Ricinus communis
29613.m000367
N
0.792
30099.m001671
Ricinus communis
30099.m001671
N
0.792
Aquca_015_00242
Aquilegia coerulea
Aquca_015_00242
N
0.771
Pm021070
Prunus mume
Pm021070
N
0.771
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.771
Aquca_015_00243
Aquilegia coerulea
Aquca_015_00243
N
0.771
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.771
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.771
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.771
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.771
MDP0000168914
Malus domestica
MDP0000168914
N
0.771
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.763
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.750
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.750
Ca_26354
Cicer arietinum
Ca_26354
N
0.750
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.750
Cla006571
Citrullus lanatus
Cla006571
N
0.750
Ca_07607
Cicer arietinum
Ca_07607
N
0.750
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.750
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.750
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.750
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.750
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.750
Aquca_040_00096
Aquilegia coerulea
Aquca_040_00096
N
0.750
mgf018529m
Mimulus guttatus
mgf018529m
N
0.750
mgf024307m
Mimulus guttatus
mgf024307m
N
0.750
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.750
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.750
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.750
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.750
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.750
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.750
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.750
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.750
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.750
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.750
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.750
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.750
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.750
TCM_006323
Theobroma cacao
TCM_006323
N
0.750
PDK_20s1551551g001
Phoenix dactylifera
PDK_20s1551551g001
I
0.729
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.729
SapurV1A.1128s0080
Salix purpurea
SapurV1A.1128s0080
N
0.729
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.729
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.729
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.729
Bra038225
Brassica rapa
Bra038225
N
0.729
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.729
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.729
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.729
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.729
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.729
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.729
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.729
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.729
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.729
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.729
MDP0000221590
Malus domestica
MDP0000221590
N
0.729
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.729
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.729
MDP0000434703
Malus domestica
MDP0000434703
I
0.729
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.729
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.729
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.729
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.729
TCM_006325
Theobroma cacao
TCM_006325
N
0.729
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.729
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.729
Pm021018
Prunus mume
Pm021018
N
0.729
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.729
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.729
29838.m001672
Ricinus communis
29838.m001672
N
0.729
30099.m001672
Ricinus communis
30099.m001672
N
0.729
Pm030655
Prunus mume
Pm030655
I
0.729
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.729
POPTR_0008s04110
Populus trichocarpa
POPTR_0008s04110
N
0.729
GSMUA_Achr5G26530_001
Musa acuminata
GSMUA_Achr5G26530_001
I
0.729
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.729
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.729
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.729
Bra022434
Brassica rapa
Bra022434
N
0.729
GSMUA_Achr8G07230_001
Musa acuminata
GSMUA_Achr8G07230_001
I
0.729
Gorai.012G163200
Gossypium raimondii
Gorai.012G163200
N
0.708
Gorai.N026300
Gossypium raimondii
Gorai.N026300
N
0.708
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.708
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.708
TCM_040735
Theobroma cacao
TCM_040735
N
0.708
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.708
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.708
orange1.1g036705m.g
Citrus sinensis
orange1.1g036705m.g
N
0.708
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.708
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.708
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.708
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.708
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.708
AGL62
Arabidopsis thaliana
AT5G60440
I
0.708
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.708
MDP0000278770
Malus domestica
MDP0000278770
N
0.708
MDP0000233925
Malus domestica
MDP0000233925
N
0.708
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.708
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.708
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.708
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.708
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.708
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.708
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.708
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.708
evm.TU.contig_43014
Carica papaya
evm.TU.contig_43014
N
0.708
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.708
evm.TU.contig_47064.2
Carica papaya
evm.TU.contig_47064.2
N
0.708
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.708
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.708
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.708
Ciclev10030387m.g
Citrus clementina
Ciclev10030387m.g
N
0.708
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.708
evm.TU.contig_27553.5
Carica papaya
evm.TU.contig_27553.5
N
0.708
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.708
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.708
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.708
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.708
Pm021017
Prunus mume
Pm021017
N
0.708
Pm021071
Prunus mume
Pm021071
N
0.708
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.708
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.708
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.708
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.708
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.708
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.708
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.708
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.708
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.708
29693.m002042
Ricinus communis
29693.m002042
N
0.708
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.708
Pm016629
Prunus mume
Pm016629
N
0.708
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.708
PGSC0003DMG400036006
Solanum tuberosum
PGSC0003DMG400036006
N
0.702