BRADI3G39177 (Brachypodium distachyon)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 BRADI3G39177 T253417_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.792 0.792
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G39177.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brachypodium distachyon TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.979
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.979
F775_03584 Aegilops tauschii F775_03584 I 0.979
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.896
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.896
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.896
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.896
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.896
Bra015643 Brassica rapa Bra015643 I 0.896
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.896
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.896
Bo6g121640 Brassica oleracea Bo6g121640 I 0.896
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.896
OB08G26170 Oryza brachyantha OB08G26170 I 0.896
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.896
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.896
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.896
Si008439m.g Setaria italica Si008439m.g I 0.896
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.875
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.875
OB06G17440 Oryza brachyantha OB06G17440 I 0.875
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.875
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.875
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.875
OBART08G19110 Oryza barthii OBART08G19110 I 0.875
OBART06G07860 Oryza barthii OBART06G07860 I 0.875
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.875
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.875
TCM_001182 Theobroma cacao TCM_001182 I 0.875
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.875
TCM_034970 Theobroma cacao TCM_034970 I 0.875
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.875
Cla014721 Citrullus lanatus Cla014721 I 0.875
Ca_24539 Cicer arietinum Ca_24539 I 0.875
OS08G0494100 Oryza sativa OS08G0494100 I 0.875
OS06G0223300 Oryza sativa OS06G0223300 I 0.875
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.875
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.875
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.875
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.875
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.875
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.875
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.875
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.875
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.875
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.875
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.875
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.875
AGL66 Arabidopsis thaliana AT1G77980 I 0.875
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.875
MDP0000243965 Malus domestica MDP0000243965 I 0.875
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.875
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.875
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.875
Bo7g060150 Brassica oleracea Bo7g060150 I 0.854
Bra012308 Brassica rapa Bra012308 I 0.854
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.854
Bo8g071330 Brassica oleracea Bo8g071330 I 0.854
Si013985m.g Setaria italica Si013985m.g I 0.854
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.854
Pm019181 Prunus mume Pm019181 I 0.854
29908.m005982 Ricinus communis 29908.m005982 I 0.854
AGL104 Arabidopsis thaliana AT1G22130 I 0.854
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.854
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.854
Bra016386 Brassica rapa Bra016386 I 0.854
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.854
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.854
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.854
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.854
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.854
30170.m013776 Ricinus communis 30170.m013776 I 0.833
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.833
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.833
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.833
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.833
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.833
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.833
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.833
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.833
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.833
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.833
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.812
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.812
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.812
mgf017317m Mimulus guttatus mgf017317m I 0.812
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.812
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.812
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.812
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.812
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.792
Ca_01572 Cicer arietinum Ca_01572 I 0.792
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.792
Pm005355 Prunus mume Pm005355 I 0.792
TCM_034757 Theobroma cacao TCM_034757 I 0.792
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.792
AGL67 Arabidopsis thaliana AT1G77950 D 0.792
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.792
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.792
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.792
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.792
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.792
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.792
MDP0000152821 Malus domestica MDP0000152821 I 0.792
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.771
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.771
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.771
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.771
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.771
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.771
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.771
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.750
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.750
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.750
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.750
mgf006616m Mimulus guttatus mgf006616m I 0.729
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.729
mgf019100m Mimulus guttatus mgf019100m N 0.729
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.729
Solyc03g019710.2 Solanum lycopersicum Solyc03g019710.2 I 0.729
Q40172_SOLLC Solanum lycopersicum Q40172_SOLLC I 0.729
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.729
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.729
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.729
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.729
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.729
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.729
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.729
Bo6g121610 Brassica oleracea Bo6g121610 I 0.729
Cla002664 Citrullus lanatus Cla002664 I 0.729
MDP0000179718 Malus domestica MDP0000179718 I 0.727
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
Bra026543 Brassica rapa Bra026543 I 0.708
Bra015645 Brassica rapa Bra015645 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.708
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
Bra013662 Brassica rapa Bra013662 I 0.708
SapurV1A.0833s0010 Salix purpurea SapurV1A.0833s0010 I 0.708
SapurV1A.4216s0020 Salix purpurea SapurV1A.4216s0020 I 0.708
MADS56 Oryza indica BGIOSGA033356 I 0.708
Bo2g137070 Brassica oleracea Bo2g137070 I 0.708
SapurV1A.0173s0340 Salix purpurea SapurV1A.0173s0340 I 0.708
Thhalv10004767m.g Eutrema salsugineum Thhalv10004767m.g I 0.708
AGL3 Arabidopsis thaliana AT2G03710 D 0.708
SEP4 Arabidopsis lyrata Al_scaffold_0005_309 I 0.708
Bo9g074400 Brassica oleracea Bo9g074400 I 0.708
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.708
Bo7g081460 Brassica oleracea Bo7g081460 I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Bo1g031900 Brassica oleracea Bo1g031900 I 0.708
OB10G24040 Oryza brachyantha OB10G24040 I 0.708
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.708
Bostr.0556s0185 Boechera stricta Bostr.0556s0185 I 0.708
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.708
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
Ca_06280 Cicer arietinum Ca_06280 I 0.708
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.708
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.708
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.708
Eucgr.E01330 Eucalyptus grandis Eucgr.E01330 I 0.708
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.708
OBART10G16960 Oryza barthii OBART10G16960 I 0.708
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.708
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.708
Cagra.0447s0009 Capsella grandiflora Cagra.0447s0009 I 0.708
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.708
Carubv10017787m.g Capsella rubella Carubv10017787m.g I 0.708
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
MTR_5g061740 Medicago truncatula MTR_5g061740 N 0.704