CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI4G39420
(
Brachypodium distachyon
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
BRADI4G39420
T253428_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI4G39420.1
MADS box
19
66
RIDSDQARQVCFSKRRAGLFKKAGELSVLCGVQVAAVVFSPAGKAYSF
Links
Other
MADS box
family TFs
Other
Brachypodium distachyon
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb09g029120
Sorghum bicolor
Sb09g029120
I
0.854
AC234185.1_FG006
Zea mays
AC234185.1_FG006
I
0.854
Si019951m.g
Setaria italica
Si019951m.g
I
0.854
GRMZM5G891280
Zea mays
GRMZM5G891280
I
0.854
Pavir.J11717
Panicum virgatum
Pavir.J11717
I
0.854
Pavir.J00788
Panicum virgatum
Pavir.J00788
I
0.854
OPUNC01G44670
Oryza punctata
OPUNC01G44670
N
0.812
OPUNC09G00580
Oryza punctata
OPUNC09G00580
N
0.812
ONIVA09G00960
Oryza nivara
ONIVA09G00960
N
0.812
OMERI09G00900
Oryza meridionalis
OMERI09G00900
N
0.812
ORGLA01G0394900
Oryza glaberrima
ORGLA01G0394900
N
0.812
ONIVA01G52000
Oryza nivara
ONIVA01G52000
N
0.812
ORUFI01G49230
Oryza rufipogon
ORUFI01G49230
N
0.812
OS09G0116800
Oryza sativa
OS09G0116800
N
0.812
Traes_6DL_609A01BD5
Triticum aestivum
Traes_6DL_609A01BD5
I
0.812
OS01G0975800
Oryza sativa
OS01G0975800
N
0.812
OLONG_018222
Oryza longistaminata
OLONG_018222
N
0.812
TRAES3BF106100060CFD_g
Triticum aestivum
TRAES3BF106100060CFD_g
I
0.812
ORUFI09G00870
Oryza rufipogon
ORUFI09G00870
N
0.812
ORGLA09G0007400
Oryza glaberrima
ORGLA09G0007400
N
0.812
OLONG_027660
Oryza longistaminata
OLONG_027660
N
0.812
BGIOSGA005284
Oryza indica
BGIOSGA005284
N
0.812
OGLUM09G01140
Oryza glumaepatula
OGLUM09G01140
N
0.812
BGIOSGA030217
Oryza indica
BGIOSGA030217
N
0.812
F775_43210
Aegilops tauschii
F775_43210
I
0.812
F775_04223
Aegilops tauschii
F775_04223
I
0.812
OGLUM01G50090
Oryza glumaepatula
OGLUM01G50090
N
0.812
OBART09G00850
Oryza barthii
OBART09G00850
N
0.812
OBART01G45740
Oryza barthii
OBART01G45740
N
0.812
LPERR01G40130
Leersia perrieri
LPERR01G40130
N
0.792
OB01G55160
Oryza brachyantha
OB01G55160
N
0.792
GSMUA_Achr8G07230_001
Musa acuminata
GSMUA_Achr8G07230_001
I
0.771
GSMUA_Achr5G26530_001
Musa acuminata
GSMUA_Achr5G26530_001
I
0.771
LPERR02G10390
Leersia perrieri
LPERR02G10390
N
0.771
BRADI2G26320
Brachypodium distachyon
BRADI2G26320
N
0.750
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.729
BRADI1G20090
Brachypodium distachyon
BRADI1G20090
N
0.729
AMTR_s00025p00244880
Amborella trichopoda
AMTR_s00025p00244880
N
0.708
Pavir.Bb00804
Panicum virgatum
Pavir.Bb00804
N
0.708
Pavir.Ba03370
Panicum virgatum
Pavir.Ba03370
N
0.708
F775_23176
Aegilops tauschii
F775_23176
N
0.708
OB06G21580
Oryza brachyantha
OB06G21580
N
0.708
MLOC_76418
Hordeum vulgare
MLOC_76418
I
0.708
Sb07g026180
Sorghum bicolor
Sb07g026180
I
0.708
Si014540m.g
Setaria italica
Si014540m.g
I
0.708
Si032189m.g
Setaria italica
Si032189m.g
N
0.708