CBN13204 (Caenorhabditis brenneri)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 CBN13204 T253476_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MEF2C
M02745_2.00 		Homo sapiens
TWCTAWAAATAG
CTATTTWTAGWA		 SELEX
Jolma et al.(2010)
MEF2C_dimer 		0.958 0.958
MEF2C
M05551_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX 		0.958 0.958
MEF2C
M08149_2.00 		Homo sapiens
NDDMYAAAAATAGMH
DKCTATTTTTRKHHN		 ChIP-seq
Mathelier et al.(2014)
MA0497.1 		0.958 0.958
MEF2C
M07980_2.00 		Homo sapiens
NDDYYAAAAATAGHH
DDCTATTTTTRRHHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha 		0.958 0.958
MEF2C
M09248_2.00 		Homo sapiens
DYYAAAAATARMH
DKYTATTTTTRRH		 Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A 		0.958 0.958
Mef2c
M09253_2.00 		Mus musculus
DDMYAAAAATAGMHN
NDKCTATTTTTRKHH		 Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A 		0.958 0.958
MEF2C
M09597_2.00 		Homo sapiens
DHYWDAAATARM
KYTATTTHWRDH		 Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465 		0.958 0.958
MEF2C
M10945_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2C_02 		0.958 0.958
MEF2C
M10946_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2C_Q4 		0.958 0.958
MEF2C
M05552_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX 		0.958 0.958
MEF2A
M03340_2.00 		Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM		 SELEX
Jolma et al.(2013)
MEF2A_1 		0.938 0.938
MEF2A
M07979_2.00 		Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha 		0.938 0.938
MEF2A
M08212_2.00 		Homo sapiens
CTAWWWWTAG
CTAWWWWTAG		 ChIP-seq
Contrino et al.(2012)
Mv88 		0.938 0.938
MEF2A
M08213_2.00 		Homo sapiens
AAAATAGM
KCTATTTT		 ChIP-seq
Contrino et al.(2012)
Mv90 		0.938 0.938
MEF2A
M09247_2.00 		Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH		 Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A 		0.938 0.938
Mef2a
M09255_2.00 		Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH		 Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A 		0.938 0.938
Mef2a
M09599_2.00 		Mus musculus
CYNDAAATAG
CTATTTHNRG		 Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529 		0.938 0.938
MEF2A
M10933_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AMEF2_Q6 		0.938 0.938
MEF2A
M10934_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMEF2_Q6 		0.938 0.938
MEF2A
M10935_2.00 		Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV		 Transfac
Matys et al.(2006)
V$MEF2_01 		0.938 0.938
MEF2A
M10936_2.00 		Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV		 Transfac
Matys et al.(2006)
V$MEF2_02 		0.938 0.938
MEF2A
M10937_2.00 		Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN		 Transfac
Matys et al.(2006)
V$MEF2_03 		0.938 0.938
MEF2A
M10938_2.00 		Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN		 Transfac
Matys et al.(2006)
V$MEF2_04 		0.938 0.938
MEF2A
M10939_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_05 		0.938 0.938
MEF2A
M10940_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_Q6 		0.938 0.938
MEF2A
M10941_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2_Q6_02 		0.938 0.938
MEF2A
M10942_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MMEF2_Q6 		0.938 0.938
MEF2A
M10943_2.00 		Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN		 Transfac
Matys et al.(2006)
V$RSRFC4_01 		0.938 0.938
MEF2A
M10944_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RSRFC4_Q2 		0.938 0.938
MEF2D
M03343_2.00 		Homo sapiens
DCTAWAAATAGM
KCTATTTWTAGH		 SELEX
Jolma et al.(2013)
MEF2D_1 		0.917 0.917
MEF2D
M05555_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX 		0.917 0.917
MEF2D
M09250_2.00 		Homo sapiens
CTAWAAATAGMH
DKCTATTTWTAG		 Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A 		0.917 0.917
Mef2d
M09252_2.00 		Mus musculus
DDCTAWAAATAGMH
DKCTATTTWTAGHH		 Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A 		0.917 0.917
MEF2D
M10957_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2D_Q4 		0.917 0.917
MEF2D
M05556_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX 		0.917 0.917
MEF2B
M03344_2.00 		Homo sapiens
RCTAWAAATAGM
KCTATTTWTAGY		 SELEX
Jolma et al.(2013)
MEF2B_1 		0.896 0.896
MEF2B
M05557_2.00 		Homo sapiens
CYNDWWWHGG
CCDWWWHNRG		 SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX 		0.896 0.896
MEF2B
M05559_2.00 		Homo sapiens
CCVDWTATGGTAACA
TGTTACCATAWHBGG		 SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX 		0.896 0.896
MEF2B
M09251_2.00 		Homo sapiens
CYWAAAATAGHHHH
DDDDCTATTTTWRG		 Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A 		0.896 0.896
MEF2B
M05558_2.00 		Homo sapiens
CYWWWWWNGG
CCNWWWWWRG		 SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX 		0.896 0.896
MEF2B
M05560_2.00 		Homo sapiens
CCVDATATGGTAACR
YGTTACCATATHBGG		 SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX 		0.896 0.896
Mef2
M08214_2.00 		Drosophila melanogaster
YTAWWWWTAR
YTAWWWWTAR		 ChIP-seq
Contrino et al.(2012)
Mf26 		0.854 0.854
Mef2b
M10958_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2B_02 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN13204 MADS box 10 57

Links

Other MADS box family TFs
Other Caenorhabditis brenneri TFs

493 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N 0.000
AAEL009092 Aedes aegypti AAEL009092 N 0.000
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N 0.000
AALB003420 Anopheles albimanus AALB003420 N 0.000
AARA002212 Anopheles arabiensis AARA002212 N 0.000
AATE002410 Anopheles atroparvus AATE002410 N 0.000
ACHR009221 Anopheles christyi ACHR009221 N 0.000
ADAC010420 Anopheles darlingi ADAC010420 N 0.000
AEPI009380 Anopheles epiroticus AEPI009380 N 0.000
AFAF012002 Anopheles farauti AFAF012002 N 0.000
AGAP001761 Anopheles gambiae AGAP001761 N 0.000
AMEC017514 Anopheles melas AMEC017514 N 0.000
AMEM008456 Anopheles merus AMEM008456 N 0.000
AQUA000629 Anopheles quadriannulatus AQUA000629 N 0.000
Afo_R008528 Aptenodytes forsteri Afo_R008528 N 0.000
ENSAMXG00000012483 Astyanax mexicanus ENSAMXG00000012483 N 0.000
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N 0.000
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N 0.000
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N 0.000
CLEC001936 Cimex lectularius CLEC001936 N 0.000
CpipJ_CPIJ012963 Culex pipiens CpipJ_CPIJ012963 N 0.000
CPIJ012963 Culex quinquefasciatus CPIJ012963 N 0.000
KGM_16996 Danaus plexippus KGM_16996 N 0.000
cers3b Danio rerio ENSDARG00000036337 N 0.000
DAPPUDRAFT_220106 Daphnia pulex DAPPUDRAFT_220106 N 0.000
YQE_11876 Dendroctonus ponderosae YQE_11876 N 0.000
ENSGMOG00000018099 Gadus morhua ENSGMOG00000018099 N 0.000
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N 0.000
HHAL005214-PA Halyomorpha halys HHAL005214-PA N 0.000
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N 0.000
HMEL006147 Heliconius melpomene HMEL006147 N 0.000
HelroG82517 Helobdella robusta HelroG82517 N 0.000
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N 0.000
LDEC003623 Leptinotarsa decemlineata LDEC003623 N 0.000
LotgiG226091 Lottia gigantea LotgiG226091 N 0.000
MCINX005366 Melitaea cinxia MCINX005366 N 0.000
MCINX005367 Melitaea cinxia MCINX005367 N 0.000
ENSMICG00000017321 Microcebus murinus ENSMICG00000017321 N 0.000
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N 0.000
Ogr04694 Ophisaurus gracilis Ogr04694 N 0.000
Ogr00854 Ophisaurus gracilis Ogr00854 N 0.000
CERS5 Oryzias latipes ENSORLG00000010219 N 0.000
ENSPFOG00000013551 Poecilia formosa ENSPFOG00000013551 N 0.000
PGTG_05144 Puccinia graminis PGTG_05144 N 0.000
PTTG_09683 Puccinia triticina PTTG_09683 N 0.000
RPRC008736 Rhodnius prolixus RPRC008736 N 0.000
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N 0.000
SINV20227 Solenopsis invicta SINV20227 N 0.000
SINV24013 Solenopsis invicta SINV24013 N 0.000
CERS5 Takifugu rubripes ENSTRUG00000010435 N 0.000
cers3.L Xenopus laevis XB-GENE-6251639 N 0.000
L798_00373 Zootermopsis nevadensis L798_00373 N 0.000