fgenesh1_pg.C_scaffold_2000489 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh1_pg.C_scaffold_2000489 T254003_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL50
M10904_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G59810_01 		0.870 0.870
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2000489 MADS box 17 62

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_200645.1 Arabidopsis lyrata scaffold_200645.1 I 0.957
AGL49 Arabidopsis thaliana AT1G60040 I 0.909
AGL50 Arabidopsis thaliana AT1G59810 D 0.870
Carubv10022233m.g Capsella rubella Carubv10022233m.g I 0.804
Cagra.5017s0002 Capsella grandiflora Cagra.5017s0002 I 0.804
Al_scaffold_0002_596 Arabidopsis lyrata Al_scaffold_0002_596 I 0.739