fgenesh1_pm.C_scaffold_4000481 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh1_pm.C_scaffold_4000481 T254009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL33
M10911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT2G26320_01 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_4000481 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_3101 Arabidopsis lyrata Al_scaffold_0007_3101 I 0.896
AGL33 Arabidopsis thaliana AT2G26320 D 0.833
Thhalv10002204m.g Eutrema salsugineum Thhalv10002204m.g I 0.750
Bostr.26326s0009 Boechera stricta Bostr.26326s0009 I 0.729
Bo8g098790 Brassica oleracea Bo8g098790 I 0.708