CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AGL55
(
Arabidopsis lyrata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
fgenesh2_kg.2__370__AT1G60920.1
T254022_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL55
M06983_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
AGL55_col_a
0.812
0.812
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.2__370__AT1G60920.1
MADS box
12
64
PIENKNMRSVAFTKRRNGLFRKASELCLLSPGTQIAILLTPLSSNSHASFYSF
Links
Other
MADS box
family TFs
Other
Arabidopsis lyrata
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy