GALMADRAFT_220913 (Galerina marginata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GALMADRAFT_220913 T254066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.854 0.854
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.771 0.771
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.771 0.771
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.771 0.771
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.771 0.771
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.771 0.771
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.771 0.771
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.750 0.750
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.750 0.750
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.750 0.750
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.750 0.750
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.750 0.750
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.750 0.750
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.750 0.750
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.750 0.750
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.750 0.750
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.750 0.750
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.750 0.750
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.750 0.750
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.750 0.750
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.750 0.750
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.750 0.750
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.750 0.750
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.750 0.750
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.750 0.750
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.750 0.750
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.750 0.750
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.750 0.750
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.750 0.750
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.708 0.708
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KDR82918 MADS box 91 142

Links

Other MADS box family TFs
Other Galerina marginata TFs

443 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LIN28B Homo sapiens ENSG00000187772 D 0.000
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.000
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.000
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.000
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.000
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.000
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.000
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.000
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.000
LIN28B Sorex araneus ENSSARG00000008374 I 0.000
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.000
LIN28A Sus scrofa ENSSSCG00000003557 I 0.000
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.000
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.000
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.000
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.000
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.000
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.000
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.000
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.000
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.000
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.000
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.000
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.000
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.000
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.000
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.000
LIN28B Oryzias latipes ENSORLG00000012891 I 0.000
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.000
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.000
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.000
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.000
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.000
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.000
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.000
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.000
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.000
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.000
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.000
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.000
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.000
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.000
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.000
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.000
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.000
yakG040859 Bos grunniens yakG040859 I 0.000
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.000
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.000
lin28a Xenopus tropicalis XB-GENE-491384 I 0.000
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.000
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.000
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.000
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.000
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.000
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.000
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.000
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.000
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.000
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.000
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.000
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.000
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.000
Aan_R005866 Calypte anna Aan_R005866 I 0.000
Aan_R007025 Calypte anna Aan_R007025 I 0.000
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.000
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.000
lin28a.S Xenopus laevis XB-GENE-866059 I 0.000
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.000
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.000
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.000
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.000
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.000
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.000
LIN28A Danio rerio ENSDARG00000004328 I 0.000
lin28a Danio rerio ENSDARG00000016999 I 0.000
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.000
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.000
LIN28A Equus caballus ENSECAG00000020267 I 0.000
LIN28B Equus caballus ENSECAG00000020994 I 0.000
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.000
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.000
LIN28B Echinops telfairi ENSETEG00000015340 I 0.000
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.000
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.000
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.000
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.000
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.000
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.000
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.000
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.000
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.000
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.000
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.000
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.000
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.000
LIN28B Canis familiaris ENSCAFG00000003598 I 0.000
LIN28A Canis familiaris ENSCAFG00000012488 I 0.000
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.000
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.000
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.000
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.000
LIN28B Felis catus ENSFCAG00000005058 I 0.000
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.000
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.000
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.000
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.000
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.000
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.000
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.000
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.000
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.000
Lin28a Mus musculus ENSMUSG00000050966 I 0.000
Lin28b Mus musculus ENSMUSG00000063804 I 0.000
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.000
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.000
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.000
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.000
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.000
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.000
LIN28A Felis catus ENSFCAG00000012810 I 0.000
LIN28A Homo sapiens ENSG00000131914 I 0.000
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.000
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.000
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.000
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.000
LIN28B Gallus gallus ENSGALG00000026761 I 0.000
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.000
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.000
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.000
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.000
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.000
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.000
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.000
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.000