CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA08G38880
(
Glycine max
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GLYMA08G38880
T254151_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA08G38880.2
MADS box
10
57
EVKDPNTRQVTFSKRRSGLFKKANELSILCGVEIAMVVFSIGNKPYSF
Links
Other
MADS box
family TFs
Other
Glycine max
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL91
Arabidopsis thaliana
AT3G66656
D
0.708
Ca_05023
Cicer arietinum
Ca_05023
I
0.875
Ca_24185
Cicer arietinum
Ca_24185
I
0.875
Pm030655
Prunus mume
Pm030655
I
0.708
29693.m002039
Ricinus communis
29693.m002039
I
0.708
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.729
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.729
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.729
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.729
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.729
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.729
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.875
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.729
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.729
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.708
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.896
TCM_029518
Theobroma cacao
TCM_029518
I
0.708
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.708
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.812
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.833
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.896
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.938
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.833
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.854
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.833
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.896
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.833
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.812
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.833
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.708
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.708
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.708
chr3.CM0059.60.nd
Lotus japonicus
chr3.CM0059.60.nd
N
0.833
MDP0000274606
Malus domestica
MDP0000274606
N
0.708
MDP0000120467
Malus domestica
MDP0000120467
N
0.729
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.875
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.729
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.729
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.729
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.771
Cla019897
Citrullus lanatus
Cla019897
N
0.708
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.729
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.708