GLYMA13G09660 (Glycine max)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GLYMA13G09660 T254200_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.875 0.875
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.854 0.854
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.833 0.833
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR

YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G09660.1 MADS box 10 57

Links

Other MADS box family TFs
Other Glycine max TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 1.000
GLYMA14G24590 Glycine max GLYMA14G24590 I 1.000
Ca_13111 Cicer arietinum Ca_13111 I 0.979
Ca_03887 Cicer arietinum Ca_03887 I 0.917
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.917
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.917
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.917
TCM_035212 Theobroma cacao TCM_035212 I 0.896
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.896
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.896
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.896
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.896
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.896
29648.m001978 Ricinus communis 29648.m001978 I 0.896
Cla023547 Citrullus lanatus Cla023547 I 0.896
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.875
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.875
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.875
PI Vitis vinifera VIT_18s0001g01760 I 0.875
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.875
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.875
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.875
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.854
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.854
Pm004718 Prunus mume Pm004718 I 0.854
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.854
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.854
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.854
mgf008207m Mimulus guttatus mgf008207m I 0.833
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.833
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.833
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.812
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.750
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.750
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.750
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.750
Bo3g010390 Brassica oleracea Bo3g010390 I 0.750
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.750
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.750
PI Arabidopsis thaliana AT5G20240 D 0.750
Bo3g014100 Brassica oleracea Bo3g014100 I 0.729
Bo2g020730 Brassica oleracea Bo2g020730 I 0.729
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.729
Bo9g152080 Brassica oleracea Bo9g152080 I 0.729
Bra002285 Brassica rapa Bra002285 I 0.729
Bra020093 Brassica rapa Bra020093 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.729
Bra006549 Brassica rapa Bra006549 I 0.729
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
TCM_000266 Theobroma cacao TCM_000266 I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
MLOC_59262 Hordeum vulgare MLOC_59262 I 0.708
AP3 Vitis vinifera VIT_18s0001g13460 I 0.708
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.708
Pm006266 Prunus mume Pm006266 I 0.708
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
TRIUR3_15782 Triticum urartu TRIUR3_15782 I 0.708
TRAES3BF021600020CFD_g Triticum aestivum TRAES3BF021600020CFD_g I 0.708
Pm026712 Prunus mume Pm026712 I 0.702