CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G105387
(
Zea mays
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GRMZM2G105387
T254292_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.872
0.872
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.745
0.745
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.745
0.745
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.723
0.723
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.723
0.723
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.723
0.723
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.723
0.723
AG
M10924_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.723
0.723
AG
M10925_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.723
0.723
AG_TOBAC
M10995_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.723
0.723
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.723
0.723
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.723
0.723
SEP2
M10916_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL4_01
0.723
0.723
AG
M10926_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.723
0.723
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.723
0.723
Q08711_PETHY
M10999_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.723
0.723
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.723
0.723
Q8VWZ3_MALDO
M11025_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.723
0.723
Q8VWZ2_MALDO
M11024_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.723
0.723
MADS3_ORYSJ
M10963_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.723
0.723
AG_PETHY
M10994_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.723
0.723
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.702
0.702
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.702
0.702
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.702
0.702
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.702
0.702
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.702
0.702
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.702
0.702
SEP1
M10929_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.702
0.702
SEP1
M10930_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.702
0.702
SEP3
M10902_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.702
0.702
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.702
0.702
MLOC_61901
M10964_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.702
0.702
AGL9_PETHY
M10993_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.702
0.702
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.702
0.702
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.702
0.702
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.702
0.702
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.702
0.702
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.702
0.702
Q9AR49_MAIZE
M10980_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.702
0.702
O82698_MALDO
M11021_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.702
0.702
O82084_MALDO
M11018_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.702
0.702
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.702
0.702
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.702
0.702
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.702
0.702
MADS15
M10972_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_01
0.702
0.702
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.702
0.702
MADS18
M10973_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.702
0.702
MADS2
M10966_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.702
0.702
Q9FR84_MAIZE
M10981_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.702
0.702
Q9ST54_MALDO
M11029_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.702
0.702
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.702
0.702
O82697_MALDO
M11020_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.702
0.702
MADS7
M10975_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.702
0.702
MADS8
M10976_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.702
0.702
Q9SBA6_MALDO
M11028_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.702
0.702
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.702
0.702
Q38742_ANTMA
M11000_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.702
0.702
Q84LI3_WHEAT
M10979_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT1_01
0.702
0.702
O82128_WHEAT
M10965_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WAP1_01
0.702
0.702
Q41829_MAIZE
M10977_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G105387_P01
MADS box
10
56
RVENPVHRQVTFCKRRAGLLKKARELSVLCDASVGIIVFSAHGKLYD
GRMZM2G105387_P02
MADS box
10
56
RVENPVHRQVTFCKRRAGLLKKARELSVLCDASVGIIVFSAHGKLYD
GRMZM2G105387_P03
MADS box
10
56
RVENPVHRQVTFCKRRAGLLKKARELSVLCDASVGIIVFSAHGKLYD
GRMZM2G105387_P04
MADS box
10
56
RVENPVHRQVTFCKRRAGLLKKARELSVLCDASVGIIVFSAHGKLYD
Links
Other
MADS box
family TFs
Other
Zea mays
TFs
865 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy