CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G128953
(
Zea mays
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GRMZM2G128953
T254296_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G128953_P01
MADS box
10
57
KIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEY
GRMZM2G128953_P02
MADS box
10
57
KIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEY
Links
Other
MADS box
family TFs
Other
Zea mays
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC233912.1_FG001
Zea mays
AC233912.1_FG001
I
1.000
Pavir.Ga00461
Panicum virgatum
Pavir.Ga00461
I
0.979
GRMZM2G135018
Zea mays
GRMZM2G135018
I
0.979
GRMZM2G005155
Zea mays
GRMZM2G005155
I
0.979
Sb06g028420
Sorghum bicolor
Sb06g028420
I
0.979
GRMZM2G446426
Zea mays
GRMZM2G446426
N
0.958
Pavir.Gb00526
Panicum virgatum
Pavir.Gb00526
I
0.958
GRMZM2G137387
Zea mays
GRMZM2G137387
I
0.958
GRMZM2G148220
Zea mays
GRMZM2G148220
N
0.938
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.917
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.896
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.896
MADS31
Oryza sativa
OS04G0614100
I
0.896
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.896
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.896
OBART04G25610
Oryza barthii
OBART04G25610
I
0.896
OB04G32080
Oryza brachyantha
OB04G32080
I
0.896
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.896
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.896
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.875
OLONG_021245
Oryza longistaminata
OLONG_021245
I
0.875
MLOC_12133
Hordeum vulgare
MLOC_12133
I
0.854
Traes_2AL_8DF89AA72
Triticum aestivum
Traes_2AL_8DF89AA72
I
0.854
Traes_2DL_6CD5A5CD9
Triticum aestivum
Traes_2DL_6CD5A5CD9
I
0.854
TRIUR3_18402
Triticum urartu
TRIUR3_18402
I
0.854
F775_05654
Aegilops tauschii
F775_05654
I
0.854
GSMUA_Achr2G02660_001
Musa acuminata
GSMUA_Achr2G02660_001
I
0.833
GSMUA_Achr3G23580_001
Musa acuminata
GSMUA_Achr3G23580_001
I
0.792
Traes_6BS_5789476CB
Triticum aestivum
Traes_6BS_5789476CB
I
0.750
Traes_6AS_57E50EE92
Triticum aestivum
Traes_6AS_57E50EE92
I
0.750
Pavir.Da00991
Panicum virgatum
Pavir.Da00991
I
0.750
Traes_6DS_9BBDCC9F7
Triticum aestivum
Traes_6DS_9BBDCC9F7
I
0.750
F775_30836
Aegilops tauschii
F775_30836
I
0.750
MLOC_65966
Hordeum vulgare
MLOC_65966
I
0.750
TRIUR3_26896
Triticum urartu
TRIUR3_26896
I
0.750
BRADI3G05260
Brachypodium distachyon
BRADI3G05260
I
0.750
ORUFI06G14980
Oryza rufipogon
ORUFI06G14980
I
0.729
MADS29
Oryza sativa
OS02G0170300
I
0.729
ORUFI02G05500
Oryza rufipogon
ORUFI02G05500
I
0.729
OPUNC06G13170
Oryza punctata
OPUNC06G13170
I
0.729
OS06G0347700
Oryza sativa
OS06G0347700
I
0.729
ORGLA02G0049700
Oryza glaberrima
ORGLA02G0049700
I
0.729
ORGLA06G0125600
Oryza glaberrima
ORGLA06G0125600
I
0.729
Carubv10026982m.g
Capsella rubella
Carubv10026982m.g
I
0.729
Pavir.Ab00475
Panicum virgatum
Pavir.Ab00475
I
0.729
TT16
Vitis vinifera
VIT_01s0011g01560
I
0.729
Si018183m.g
Setaria italica
Si018183m.g
I
0.729
AMTR_s00002p00262770
Amborella trichopoda
AMTR_s00002p00262770
I
0.729
Pavir.Aa03173
Panicum virgatum
Pavir.Aa03173
I
0.729
Sb04g004736
Sorghum bicolor
Sb04g004736
I
0.729
BGIOSGA007056
Oryza indica
BGIOSGA007056
I
0.729
OGLUM02G05240
Oryza glumaepatula
OGLUM02G05240
I
0.729
OGLUM06G15040
Oryza glumaepatula
OGLUM06G15040
I
0.729
OLONG_018231
Oryza longistaminata
OLONG_018231
I
0.729
OBART06G14060
Oryza barthii
OBART06G14060
I
0.729
OB02G14670
Oryza brachyantha
OB02G14670
I
0.729
F775_15097
Aegilops tauschii
F775_15097
I
0.729
LPERR02G04610
Leersia perrieri
LPERR02G04610
I
0.729
M17_MAIZE
Zea mays
M17_MAIZE
D
0.729
OMERI02G06250
Oryza meridionalis
OMERI02G06250
I
0.729
OBART02G05380
Oryza barthii
OBART02G05380
I
0.729
ONIVA02G05710
Oryza nivara
ONIVA02G05710
I
0.729
OMERI06G15180
Oryza meridionalis
OMERI06G15180
I
0.729
OPUNC02G04560
Oryza punctata
OPUNC02G04560
I
0.729
BGIOSGA022872
Oryza indica
BGIOSGA022872
I
0.729
ONIVA06G16870
Oryza nivara
ONIVA06G16870
I
0.729
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.711
Carubv10027093m.g
Capsella rubella
Carubv10027093m.g
I
0.708
Cagra.0277s0030
Capsella grandiflora
Cagra.0277s0030
I
0.708
Bostr.26833s0022
Boechera stricta
Bostr.26833s0022
I
0.708
GRMZM2G055782
Zea mays
GRMZM2G055782
I
0.708
GRMZM2G130382
Zea mays
GRMZM2G130382
I
0.708
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.708
Thhalv10015303m.g
Eutrema salsugineum
Thhalv10015303m.g
I
0.708
AGL71
Arabidopsis lyrata
Al_scaffold_0008_1558
I
0.708
AMTR_s00001p00270400
Amborella trichopoda
AMTR_s00001p00270400
I
0.708
Bostr.15774s0334
Boechera stricta
Bostr.15774s0334
I
0.708
AGL16
Arabidopsis lyrata
fgenesh2_kg.5__2158__AT3G57230.1
I
0.708
AGL15
Vitis vinifera
VIT_13s0158g00100
I
0.708
AGL71
Arabidopsis thaliana
AT5G51870
I
0.708
Bo1g007520
Brassica oleracea
Bo1g007520
I
0.708
Solyc04g076680.2
Solanum lycopersicum
Solyc04g076680.2
I
0.708
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.708
Bra011509
Brassica rapa
Bra011509
I
0.708
OPUNC04G12890
Oryza punctata
OPUNC04G12890
I
0.708
mgf025830m
Mimulus guttatus
mgf025830m
I
0.708
PGSC0003DMG400009349
Solanum tuberosum
PGSC0003DMG400009349
I
0.708
OB06G22200
Oryza brachyantha
OB06G22200
I
0.708
Traes_7BL_F5B6736D0
Triticum aestivum
Traes_7BL_F5B6736D0
I
0.708
Aquca_022_00241
Aquilegia coerulea
Aquca_022_00241
I
0.708