CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G137387
(
Zea mays
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GRMZM2G137387
T254301_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL42
M06995_2.00
Arabidopsis thaliana
RATGATG
CATCATY
Dap-seq
OMalley et al.(2016)
AGL42_col_a
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G137387_P01
MADS box
223
270
KIENPTNRQVTFSKRRMGLFKKANEVSILCDAQIRVIIFSGSGRMYEY
Links
Other
MADS box
family TFs
Other
Zea mays
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G446426
Zea mays
GRMZM2G446426
N
0.958
GRMZM2G128953
Zea mays
GRMZM2G128953
I
0.958
AC233912.1_FG001
Zea mays
AC233912.1_FG001
I
0.958
Pavir.Ga00461
Panicum virgatum
Pavir.Ga00461
I
0.938
GRMZM2G005155
Zea mays
GRMZM2G005155
I
0.938
GRMZM2G135018
Zea mays
GRMZM2G135018
I
0.938
Sb06g028420
Sorghum bicolor
Sb06g028420
I
0.938
Pavir.Gb00526
Panicum virgatum
Pavir.Gb00526
I
0.917
GRMZM2G148220
Zea mays
GRMZM2G148220
N
0.896
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.875
OBART04G25610
Oryza barthii
OBART04G25610
I
0.854
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.854
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.854
MADS31
Oryza sativa
OS04G0614100
I
0.854
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.854
OB04G32080
Oryza brachyantha
OB04G32080
I
0.854
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.854
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.854
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.854
OLONG_021245
Oryza longistaminata
OLONG_021245
I
0.833
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.833
MLOC_12133
Hordeum vulgare
MLOC_12133
I
0.812
Traes_2AL_8DF89AA72
Triticum aestivum
Traes_2AL_8DF89AA72
I
0.812
F775_05654
Aegilops tauschii
F775_05654
I
0.812
TRIUR3_18402
Triticum urartu
TRIUR3_18402
I
0.812
Traes_2DL_6CD5A5CD9
Triticum aestivum
Traes_2DL_6CD5A5CD9
I
0.812
GSMUA_Achr2G02660_001
Musa acuminata
GSMUA_Achr2G02660_001
I
0.792
Carubv10026982m.g
Capsella rubella
Carubv10026982m.g
I
0.750
GSMUA_Achr3G23580_001
Musa acuminata
GSMUA_Achr3G23580_001
I
0.750
AGL71
Arabidopsis thaliana
AT5G51870
I
0.729
Thhalv10015303m.g
Eutrema salsugineum
Thhalv10015303m.g
I
0.729
AGL71
Arabidopsis lyrata
Al_scaffold_0008_1558
I
0.729
AMTR_s00002p00262770
Amborella trichopoda
AMTR_s00002p00262770
I
0.729
Bostr.26833s0022
Boechera stricta
Bostr.26833s0022
I
0.729
TT16
Vitis vinifera
VIT_01s0011g01560
I
0.729
Bostr.15774s0334
Boechera stricta
Bostr.15774s0334
I
0.729
Cagra.0277s0030
Capsella grandiflora
Cagra.0277s0030
I
0.729
Carubv10027093m.g
Capsella rubella
Carubv10027093m.g
I
0.729
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.711
Cagra.4003s0006
Capsella grandiflora
Cagra.4003s0006
I
0.708
Bo3g023570
Brassica oleracea
Bo3g023570
I
0.708
Carubv10027142m.g
Capsella rubella
Carubv10027142m.g
I
0.708
Bo9g103660
Brassica oleracea
Bo9g103660
I
0.708
Bra028282
Brassica rapa
Bra028282
I
0.708
mgf025830m
Mimulus guttatus
mgf025830m
I
0.708
Aquca_022_00241
Aquilegia coerulea
Aquca_022_00241
I
0.708
Bra028283
Brassica rapa
Bra028283
I
0.708
MDP0000268317
Malus domestica
MDP0000268317
I
0.708
Pavir.Da00991
Panicum virgatum
Pavir.Da00991
I
0.708
Thhalv10004954m.g
Eutrema salsugineum
Thhalv10004954m.g
I
0.708
Thhalv10014716m.g
Eutrema salsugineum
Thhalv10014716m.g
I
0.708
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.708
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.708
AGL72
Arabidopsis thaliana
AT5G51860
I
0.708
Pavir.Ea03607
Panicum virgatum
Pavir.Ea03607
I
0.708
AGL42
Arabidopsis thaliana
AT5G62165
D
0.708
MLOC_65966
Hordeum vulgare
MLOC_65966
I
0.708
Pm019404
Prunus mume
Pm019404
I
0.708
scaffold_801621.1
Arabidopsis lyrata
scaffold_801621.1
I
0.708
SELMODRAFT_449545
Selaginella moellendorffii
SELMODRAFT_449545
I
0.708
SELMODRAFT_449594
Selaginella moellendorffii
SELMODRAFT_449594
I
0.708
GLYMA13G02170
Glycine max
GLYMA13G02170
I
0.708
PRUPE_ppa019267mg
Prunus persica
PRUPE_ppa019267mg
I
0.708
GSMUA_Achr6G18670_001
Musa acuminata
GSMUA_Achr6G18670_001
I
0.708
GSMUA_Achr5G01230_001
Musa acuminata
GSMUA_Achr5G01230_001
I
0.708
GLYMA14G34160
Glycine max
GLYMA14G34160
I
0.708
F775_30836
Aegilops tauschii
F775_30836
I
0.708
BRADI3G05260
Brachypodium distachyon
BRADI3G05260
I
0.708
Bra029155
Brassica rapa
Bra029155
I
0.708
TRIUR3_26896
Triticum urartu
TRIUR3_26896
I
0.708
Bra029154
Brassica rapa
Bra029154
I
0.708
Traes_6DS_9BBDCC9F7
Triticum aestivum
Traes_6DS_9BBDCC9F7
I
0.708
Traes_6BS_5789476CB
Triticum aestivum
Traes_6BS_5789476CB
I
0.708
Ca_19854
Cicer arietinum
Ca_19854
I
0.708
Traes_6AS_57E50EE92
Triticum aestivum
Traes_6AS_57E50EE92
I
0.708
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.700