GRMZM2G137510 (Zea mays)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GRMZM2G137510 T254302_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.750 0.750
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.750 0.750
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.729 0.729
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.729 0.729
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.708 0.708
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G137510_P01 MADS box 12 59
GRMZM2G137510_P02 MADS box 12 59
GRMZM2G137510_P03 MADS box 12 59

Links

Other MADS box family TFs
Other Zea mays TFs

Invalid Input OrderBy

619 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action