CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr2G01740_001
(
Musa acuminata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GSMUA_Achr2G01740_001
T254356_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.723
0.723
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr2P01740_001
MADS box
10
56
RLENSSSRQVTYSKRKAGVMKKAKELSILCDIDLVLLMFAPNGKPTV
Links
Other
MADS box
family TFs
Other
Musa acuminata
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.936
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.891
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.826
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.809
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.809
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.809
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.787
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.787
Bra016544
Brassica rapa
Bra016544
I
0.787
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.787
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.787
Bra031049
Brassica rapa
Bra031049
I
0.787
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.766
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.766
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.766
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.766
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.761
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.761
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.761
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.761
F775_13266
Aegilops tauschii
F775_13266
I
0.761
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.750
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.745
Si028357m.g
Setaria italica
Si028357m.g
N
0.745
Bra025685
Brassica rapa
Bra025685
I
0.745
OS11G0658700
Oryza sativa
OS11G0658700
N
0.745
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.745
Cla010361
Citrullus lanatus
Cla010361
I
0.745
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.745
OBART11G21780
Oryza barthii
OBART11G21780
N
0.745
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.745
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.739
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.739
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.739
30138.m004061
Ricinus communis
30138.m004061
I
0.729
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.729
PK21701.1
Cannabis sativa
PK21701.1
I
0.729
TCM_014051
Theobroma cacao
TCM_014051
I
0.723
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.723
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.723
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.723
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.723
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.723
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.723
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.723
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.723
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.723
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.723
MDP0000147667
Malus domestica
MDP0000147667
I
0.723
Pm006479
Prunus mume
Pm006479
I
0.723
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.717
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.717
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.708
AGL65
Arabidopsis thaliana
AT1G18750
D
0.708
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.708
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.708
MDP0000773068
Malus domestica
MDP0000773068
I
0.702
MDP0000919323
Malus domestica
MDP0000919323
I
0.702
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.702
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.702
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.702
Cla018884
Citrullus lanatus
Cla018884
I
0.702
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.702
Ca_18082
Cicer arietinum
Ca_18082
I
0.702
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.702
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.702
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.702
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.702
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.702
MDP0000146231
Malus domestica
MDP0000146231
I
0.702
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.702
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.702
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.702
MDP0000146415
Malus domestica
MDP0000146415
I
0.702