CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr5G26530_001
(
Musa acuminata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GSMUA_Achr5G26530_001
T254392_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.708
0.708
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708
0.708
AP1
M10905_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr5P26530_001
MADS box
20
67
RIENEEARQVCFSKRRAGLFKKATELSVLCGAEIALVVFSPAGKPFSF
Links
Other
MADS box
family TFs
Other
Musa acuminata
TFs
204 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy