CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr6G18670_001
(
Musa acuminata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GSMUA_Achr6G18670_001
T254395_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS2
M10966_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.812
0.812
Q9AR49_MAIZE
M10980_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.771
0.771
FBP1_PETHY
M10996_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.750
0.750
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.750
0.750
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.750
0.750
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr6P18670_001
MADS box
10
57
RIENSTNRQVTFSKRRNGIIKKAREISILCDAHVSVVIFSGSGKMSDY
Links
Other
MADS box
family TFs
Other
Musa acuminata
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr5G01230_001
Musa acuminata
GSMUA_Achr5G01230_001
I
0.917
Sb03g041860
Sorghum bicolor
Sb03g041860
I
0.833
GRMZM2G110153
Zea mays
GRMZM2G110153
I
0.812
OLONG_003010
Oryza longistaminata
OLONG_003010
I
0.812
OLONG_005253
Oryza longistaminata
OLONG_005253
I
0.812
OMERI01G36400
Oryza meridionalis
OMERI01G36400
I
0.812
OGLUM01G43760
Oryza glumaepatula
OGLUM01G43760
I
0.812
OB01G48280
Oryza brachyantha
OB01G48280
I
0.812
OBART01G39540
Oryza barthii
OBART01G39540
I
0.812
ORUFI05G18270
Oryza rufipogon
ORUFI05G18270
I
0.812
LPERR01G34040
Leersia perrieri
LPERR01G34040
I
0.812
Si002929m.g
Setaria italica
Si002929m.g
I
0.812
OBART05G17040
Oryza barthii
OBART05G17040
I
0.812
OMERI05G14780
Oryza meridionalis
OMERI05G14780
I
0.812
Pavir.J19259
Panicum virgatum
Pavir.J19259
I
0.812
MADS2
Oryza sativa
OS01G0883100
D
0.812
BGIOSGA019900
Oryza indica
BGIOSGA019900
I
0.812
ORGLA05G0147400
Oryza glaberrima
ORGLA05G0147400
I
0.812
ORUFI05G05970
Oryza rufipogon
ORUFI05G05970
I
0.812
BGIOSGA000377
Oryza indica
BGIOSGA000377
I
0.812
Pavir.Ea03625
Panicum virgatum
Pavir.Ea03625
I
0.812
ORGLA01G0334300
Oryza glaberrima
ORGLA01G0334300
I
0.812
ONIVA05G17790
Oryza nivara
ONIVA05G17790
I
0.812
ONIVA01G44390
Oryza nivara
ONIVA01G44390
I
0.812
OPUNC01G38250
Oryza punctata
OPUNC01G38250
I
0.812
MADS4
Oryza sativa
OS05G0423400
I
0.812
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.771
Q9AR49_MAIZE
Zea mays
Q9AR49_MAIZE
D
0.771
PGSC0003DMG401007392
Solanum tuberosum
PGSC0003DMG401007392
I
0.771
Cla023547
Citrullus lanatus
Cla023547
I
0.771
mgf006158m
Mimulus guttatus
mgf006158m
I
0.771
Si023214m.g
Setaria italica
Si023214m.g
I
0.771
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.771
mgf008207m
Mimulus guttatus
mgf008207m
I
0.771
Aquca_014_00308
Aquilegia coerulea
Aquca_014_00308
I
0.771
Pavir.J33965
Panicum virgatum
Pavir.J33965
I
0.771
Pavir.J00016
Panicum virgatum
Pavir.J00016
I
0.771
Eucgr.E01006
Eucalyptus grandis
Eucgr.E01006
I
0.771
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.771
mgf003143m
Mimulus guttatus
mgf003143m
I
0.771
Pm004718
Prunus mume
Pm004718
I
0.771
Solyc08g067230.2
Solanum lycopersicum
Solyc08g067230.2
I
0.771
GRMZM2G152862
Zea mays
GRMZM2G152862
I
0.771
PI
Vitis vinifera
VIT_18s0001g01760
I
0.771
ORUFI12G13820
Oryza rufipogon
ORUFI12G13820
I
0.759
ONIVA12G12810
Oryza nivara
ONIVA12G12810
I
0.759
FBP1_PETHY
Petunia x hybrida
FBP1_PETHY
D
0.750
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.750
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.750
AMTR_s00089p00081270
Amborella trichopoda
AMTR_s00089p00081270
I
0.750
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.750
gene11267-v1.0-hybrid
Fragaria vesca
gene11267-v1.0-hybrid
I
0.750
gene11268-v1.0-hybrid
Fragaria vesca
gene11268-v1.0-hybrid
I
0.750
29648.m001978
Ricinus communis
29648.m001978
I
0.750
Sb09g020770
Sorghum bicolor
Sb09g020770
I
0.750
GRMZM5G805387
Zea mays
GRMZM5G805387
I
0.750
OB05G24910
Oryza brachyantha
OB05G24910
I
0.750
Ca_13111
Cicer arietinum
Ca_13111
I
0.729
M17_MAIZE
Zea mays
M17_MAIZE
D
0.729
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.729
VIT_03s0097g00160
Vitis vinifera
VIT_03s0097g00160
I
0.729
TCM_035212
Theobroma cacao
TCM_035212
I
0.729
Lus10029719.g
Linum usitatissimum
Lus10029719.g
I
0.729
Gorai.008G018100
Gossypium raimondii
Gorai.008G018100
I
0.729
GLYMA04G42420
Glycine max
GLYMA04G42420
I
0.729
GLYMA14G24590
Glycine max
GLYMA14G24590
I
0.729
GLYMA13G09660
Glycine max
GLYMA13G09660
I
0.729
Ciclev10002422m.g
Citrus clementina
Ciclev10002422m.g
I
0.729
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.729
cassava26340.m1
Manihot esculenta
cassava26340.m1
I
0.729
GLYMA06G12380
Glycine max
GLYMA06G12380
I
0.729
29804.m001536
Ricinus communis
29804.m001536
I
0.729
orange1.1g042044m.g
Citrus sinensis
orange1.1g042044m.g
I
0.729
Lus10042749.g
Linum usitatissimum
Lus10042749.g
I
0.729
Pavir.Ab00475
Panicum virgatum
Pavir.Ab00475
I
0.729
Si018183m.g
Setaria italica
Si018183m.g
I
0.729
POPTR_0002s07920
Populus trichocarpa
POPTR_0002s07920
I
0.729
LjSGA_047687.2
Lotus japonicus
LjSGA_047687.2
I
0.729
Pavir.Aa03173
Panicum virgatum
Pavir.Aa03173
I
0.729
Sb04g004736
Sorghum bicolor
Sb04g004736
I
0.729
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
GLYMA08G06991
Glycine max
GLYMA08G06991
I
0.708
Eucgr.E01007
Eucalyptus grandis
Eucgr.E01007
I
0.708
Eucgr.F02161
Eucalyptus grandis
Eucgr.F02161
I
0.708
SapurV1A.0829s0180
Salix purpurea
SapurV1A.0829s0180
I
0.708
PK29837.1
Cannabis sativa
PK29837.1
I
0.708
Ciclev10032927m.g
Citrus clementina
Ciclev10032927m.g
I
0.708
PDK_20s1380661g001
Phoenix dactylifera
PDK_20s1380661g001
N
0.708
Ciclev10002471m.g
Citrus clementina
Ciclev10002471m.g
I
0.708
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
0.708
Carubv10015972m.g
Capsella rubella
Carubv10015972m.g
I
0.708
ANR1
Arabidopsis thaliana
AT2G14210
I
0.708
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.708
Pavir.Gb01527
Panicum virgatum
Pavir.Gb01527
I
0.708
Pavir.Ga01454
Panicum virgatum
Pavir.Ga01454
I
0.708
F775_29079
Aegilops tauschii
F775_29079
I
0.708
BRADI2G57000
Brachypodium distachyon
BRADI2G57000
I
0.708
BGIOSGA007056
Oryza indica
BGIOSGA007056
I
0.708
BRADI1G59250
Brachypodium distachyon
BRADI1G59250
I
0.708
orange1.1g042438m.g
Citrus sinensis
orange1.1g042438m.g
I
0.708
Gorai.007G043400
Gossypium raimondii
Gorai.007G043400
I
0.708
GLYMA15G06470
Glycine max
GLYMA15G06470
I
0.708
Si012517m.g
Setaria italica
Si012517m.g
I
0.708
OB02G14670
Oryza brachyantha
OB02G14670
I
0.708
Sb06g019040
Sorghum bicolor
Sb06g019040
I
0.708
MTR_3g088615
Medicago truncatula
MTR_3g088615
I
0.708
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.708
TCM_007324
Theobroma cacao
TCM_007324
I
0.708
MLOC_59262
Hordeum vulgare
MLOC_59262
I
0.708
OBART02G05380
Oryza barthii
OBART02G05380
I
0.708
OGLUM02G05240
Oryza glumaepatula
OGLUM02G05240
I
0.708
MADS29
Oryza sativa
OS02G0170300
I
0.708
ORGLA02G0049700
Oryza glaberrima
ORGLA02G0049700
I
0.708
OPUNC02G04560
Oryza punctata
OPUNC02G04560
I
0.708
ONIVA02G05710
Oryza nivara
ONIVA02G05710
I
0.708
OMERI02G06250
Oryza meridionalis
OMERI02G06250
I
0.708
POPTR_0005s20480
Populus trichocarpa
POPTR_0005s20480
I
0.708
Traes_1AL_1B5F51626
Triticum aestivum
Traes_1AL_1B5F51626
I
0.708
TRAES3BF021600020CFD_g
Triticum aestivum
TRAES3BF021600020CFD_g
I
0.708
ORUFI02G05500
Oryza rufipogon
ORUFI02G05500
I
0.708
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.708
GRMZM2G032905
Zea mays
GRMZM2G032905
I
0.708
Cucsa.331900
Cucumis sativus
Cucsa.331900
I
0.708
GLYMA13G32810
Glycine max
GLYMA13G32810
I
0.708
Bostr.13083s0004
Boechera stricta
Bostr.13083s0004
I
0.708
GLYMA08G07001
Glycine max
GLYMA08G07001
I
0.708
GRMZM2G130382
Zea mays
GRMZM2G130382
I
0.708
29596.m000699
Ricinus communis
29596.m000699
I
0.708
TRIUR3_25027
Triticum urartu
TRIUR3_25027
I
0.708
TRIUR3_15782
Triticum urartu
TRIUR3_15782
I
0.708
MLOC_44514
Hordeum vulgare
MLOC_44514
I
0.708
Ca_03887
Cicer arietinum
Ca_03887
I
0.708
GRMZM2G137387
Zea mays
GRMZM2G137387
I
0.708
LPERR02G04610
Leersia perrieri
LPERR02G04610
I
0.708
Cagra.3821s0004
Capsella grandiflora
Cagra.3821s0004
I
0.708