ISCW019966 (Ixodes scapularis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ISCW019966 T254469_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.979 0.979
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.979 0.979
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.979 0.979
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.979 0.979
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.979 0.979
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.979 0.979
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.979 0.979
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.979 0.979
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.979 0.979
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.979 0.979
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.979 0.979
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.979 0.979
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.979 0.979
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.979 0.979
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.979 0.979
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.979 0.979
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.979 0.979
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.979 0.979
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.979 0.979
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.979 0.979
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.979 0.979
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.979 0.979
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.979 0.979
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.979 0.979
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.917 0.917
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.875 0.875
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.792 0.792
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.792 0.792
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.792 0.792
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.792 0.792
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.792 0.792
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ISCW019966-PA MADS box 87 134

Links

Other MADS box family TFs
Other Ixodes scapularis TFs

547 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL008417 Aedes aegypti AAEL008417 N 0.000
AALB007196 Anopheles albimanus AALB007196 N 0.000
AARA009694 Anopheles arabiensis AARA009694 N 0.000
AATE006267 Anopheles atroparvus AATE006267 N 0.000
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N 0.000
ACEP12759 Atta cephalotes ACEP12759 I 0.000
ACHR002403 Anopheles christyi ACHR002403 N 0.000
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N 0.000
ACOM033320 Anopheles coluzzii ACOM033320 N 0.000
ACUA003510 Anopheles culicifacies ACUA003510 N 0.000
ACYPI003297 Acyrthosiphon pisum ACYPI003297 I 0.000
ADAC009894 Anopheles darlingi ADAC009894 N 0.000
ADIR002941 Anopheles dirus ADIR002941 N 0.000
AEPI008570 Anopheles epiroticus AEPI008570 N 0.000
AFAF018499 Anopheles farauti AFAF018499 N 0.000
AFUN011346 Anopheles funestus AFUN011346 N 0.000
AGAP004110 Anopheles gambiae AGAP004110 N 0.000
ALNC14_126360 Albugo laibachii ALNC14_126360 N 0.000
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N 0.000
AMAG_02504 Allomyces macrogynus AMAG_02504 I 0.000
AMAM021723 Anopheles maculatus AMAM021723 N 0.000
AMEC005071 Anopheles melas AMEC005071 N 0.000
AMEM002948 Anopheles merus AMEM002948 N 0.000
AMIN003838 Anopheles minimus AMIN003838 N 0.000
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N 0.000
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N 0.000
AQUA009805 Anopheles quadriannulatus AQUA009805 N 0.000
ASIS023527 Anopheles sinensis ASIS023527 N 0.000
ASTEI04275 Anopheles stephensi ASTEI04275 N 0.000
ASU_10445 Ascaris suum ASU_10445 N 0.000
A_06553 Schistosoma haematobium A_06553 N 0.000
BGIBMGA013514 Bombyx mori BGIBMGA013514 N 0.000
CapteG224864 Capitella teleta CapteG224864 I 0.000
CBN09380 Caenorhabditis brenneri CBN09380 N 0.000
ccdc124 Oryzias latipes ENSORLG00000015728 N 0.000
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I 0.000
CGI_10019404 Crassostrea gigas CGI_10019404 N 0.000
CJA05209 Caenorhabditis japonica CJA05209 N 0.000
CLEC000086 Cimex lectularius CLEC000086 N 0.000
CLEC002888 Cimex lectularius CLEC002888 N 0.000
CMU_009510 Cryptosporidium muris CMU_009510 N 0.000
CPIJ005084 Culex quinquefasciatus CPIJ005084 N 0.000
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N 0.000
CRE03905 Caenorhabditis remanei CRE03905 N 0.000
D917_07703 Trichinella nativa D917_07703 N 0.000
D918_07944 Trichuris suis D918_07944 N 0.000
DAPPUDRAFT_303074 Daphnia pulex DAPPUDRAFT_303074 N 0.000
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N 0.000
DILT_0001250601 Diphyllobothrium latum DILT_0001250601 N 0.000
ECPE_0001800901 Echinostoma caproni ECPE_0001800901 N 0.000
EFV51436 Trichinella spiralis EFV51436 N 0.000
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N 0.000
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N 0.000
estExt_fgenesh2_pg.C_1070085 Branchiostoma floridae estExt_fgenesh2_pg.C_1070085 N 0.000
estExt_fgenesh2_pm.C_3240002 Branchiostoma floridae estExt_fgenesh2_pm.C_3240002 N 0.000
ETH_00032160 Eimeria tenella ETH_00032160 N 0.000
F443_19335 Phytophthora parasitica F443_19335 N 0.000
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N 0.000
fgenesh1_pm.2_#_13 Coccomyxa subellipsoidea C169 fgenesh1_pm.2_#_13 N 0.000
fgeneshCV_pg.C_scaffold_2000022 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000022 N 0.000
fgenesh_scip_prom.28083.7036 Phytophthora lateralis fgenesh_scip_prom.28083.7036 N 0.000
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N 0.000
GB50764 Apis mellifera GB50764 I 0.000
GE25578 Drosophila yakuba FBgn0242642 I 0.000
GH18160 Drosophila grimshawi FBgn0125628 I 0.000
GK13574 Drosophila willistoni FBgn0215582 I 0.000
GLYMA04G10125 Glycine max GLYMA04G10125 I 0.000
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N 0.000
GUITHDRAFT_162866 Guillardia theta GUITHDRAFT_162866 N 0.000
HCOI00594600 Haemonchus contortus HCOI00594600 N 0.000
HelroG66455 Helobdella robusta HelroG66455 N 0.000
HHAL005242-PA Halyomorpha halys HHAL005242-PA I 0.000
HMEL009197 Heliconius melpomene HMEL009197 N 0.000
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N 0.000
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N 0.000
Hsal_04778--XP_394373.1_APIME Harpegnathos saltator Hsal_04778--XP_394373.1_APIME I 0.000
ISCW011313 Ixodes scapularis ISCW011313 N 0.000
KGM_20190 Danaus plexippus KGM_20190 I 0.000
LCUP006380 Lucilia cuprina LCUP006380 N 0.000
LotgiG126557 Lottia gigantea LotgiG126557 N 0.000
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N 0.000
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N 0.000
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N 0.000
maker-pve_contig_105-snap-gene-0.29 Pythium vexans maker-pve_contig_105-snap-gene-0.29 N 0.000
MCINX012524 Melitaea cinxia MCINX012524 I 0.000
MDOA001488 Musca domestica MDOA001488 I 0.000
mgf019496m Mimulus guttatus mgf019496m I 0.000
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N 0.000
Minc12734 Meloidogyne incognita Minc12734 N 0.000
ML11467a Mnemiopsis leidyi ML11467a N 0.000
NCLIV_051130 Neospora caninum NCLIV_051130 N 0.000
NECAME_12352 Necator americanus NECAME_12352 N 0.000
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I 0.000
NV13812 Nasonia vitripennis NV13812 I 0.000
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I 0.000
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N 0.000
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N 0.000
PHUM036320 Pediculus humanus PHUM036320 N 0.000
Phyra74523 Phytophthora ramorum Phyra74523 N 0.000
Physo132366 Phytophthora sojae Physo132366 N 0.000
PYU1_G003004 Pythium ultimum PYU1_G003004 N 0.000
RPRC009760 Rhodnius prolixus RPRC009760 N 0.000
SBAD_0000307901 Soboliphyme baturini SBAD_0000307901 N 0.000
SINV12391 Solenopsis invicta SINV12391 I 0.000
Sjc_0011880 Schistosoma japonicum Sjc_0011880 N 0.000
Smp_004360 Schistosoma mansoni Smp_004360 N 0.000
SMRZ_0002114501 Schistosoma margrebowiei SMRZ_0002114501 N 0.000
SMU15012775 Schmidtea mediterranea SMU15012775 N 0.000
SPPG_05456 Spizellomyces punctatus SPPG_05456 N 0.000
SPRG_06372 Saprolegnia parasitica SPRG_06372 N 0.000
SPU_001776 Strongylocentrotus purpuratus SPU_001776 N 0.000
T265_00523 Opisthorchis viverrini T265_00523 N 0.000
TASK_0000467701 Taenia asiatica TASK_0000467701 N 0.000
TC004658 Tribolium castaneum TC004658 N 0.000
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N 0.000
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N 0.000
tetur18g00680 Tetranychus urticae tetur18g00680 I 0.000
TGME49_037260 Toxoplasma gondii TGME49_037260 N 0.000
TRE_0001918901 Trichobilharzia regenti TRE_0001918901 N 0.000
TsM_000545400 Taenia solium TsM_000545400 N 0.000
TTRE_0000309701 Trichuris trichiura TTRE_0000309701 N 0.000
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N 0.000