CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LPERR07G13520
(
Leersia perrieri
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
LPERR07G13520
T254573_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.787
0.787
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.723
0.723
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.723
0.723
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.723
0.723
AG
M10924_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.723
0.723
AG
M10925_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.723
0.723
AG_TOBAC
M10995_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.723
0.723
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.723
0.723
AG
M10926_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.723
0.723
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.723
0.723
Q08711_PETHY
M10999_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.723
0.723
Q8VWZ3_MALDO
M11025_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.723
0.723
Q8VWZ2_MALDO
M11024_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.723
0.723
MADS3_ORYSJ
M10963_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.723
0.723
AG_PETHY
M10994_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.723
0.723
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.702
0.702
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.702
0.702
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.702
0.702
O82698_MALDO
M11021_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.702
0.702
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.702
0.702
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.702
0.702
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LPERR07G13520.1
MADS box
10
56
QIKNPTRSQVTFSKRCNGLLKKAFELFVLFDAEVALIVFTHGRLYEF
Links
Other
MADS box
family TFs
Other
Leersia perrieri
TFs
498 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy