CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_11474
(
Hordeum vulgare
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
MLOC_11474
T254658_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.761
0.761
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_11474.1
MADS box
10
55
KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGRPT
MLOC_11474.3
MADS box
10
55
KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGRPT
MLOC_11474.4
MADS box
10
55
KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGRPT
MLOC_11474.5
MADS box
10
55
KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGRPT
Links
Other
MADS box
family TFs
Other
Hordeum vulgare
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.978
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.978
F775_13266
Aegilops tauschii
F775_13266
I
0.978
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.978
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.978
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.978
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.978
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.957
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.935
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.935
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.913
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.913
Si028357m.g
Setaria italica
Si028357m.g
N
0.913
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.891
OBART11G21780
Oryza barthii
OBART11G21780
N
0.891
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.891
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.891
OS11G0658700
Oryza sativa
OS11G0658700
N
0.891
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.870
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.870
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.870
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.851
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.848
TCM_014051
Theobroma cacao
TCM_014051
I
0.848
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.848
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.848
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.826
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.826
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.826
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.826
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.826
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.812
Pm024895
Prunus mume
Pm024895
I
0.804
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.804
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.804
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.804
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.804
PK21701.1
Cannabis sativa
PK21701.1
I
0.792
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.783
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.771
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.771
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.771
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.771
MDP0000193129
Malus domestica
MDP0000193129
I
0.771
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.771
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.766
Bra025685
Brassica rapa
Bra025685
I
0.761
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.761
29813.m001508
Ricinus communis
29813.m001508
I
0.761
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.761
Cla010361
Citrullus lanatus
Cla010361
I
0.761
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.761
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.750
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.750
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.750
Bra016544
Brassica rapa
Bra016544
I
0.750
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.750
Bra031049
Brassica rapa
Bra031049
I
0.750
30138.m004061
Ricinus communis
30138.m004061
I
0.750
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.739
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.739
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.739
Cla018884
Citrullus lanatus
Cla018884
I
0.739
Bra017404
Brassica rapa
Bra017404
I
0.739
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.739
Ca_16376
Cicer arietinum
Ca_16376
I
0.739
TCM_011687
Theobroma cacao
TCM_011687
I
0.739
PK03147.1
Cannabis sativa
PK03147.1
I
0.739
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.739
estExt_gwp_gw1.C_340302
Physcomitrella patens
estExt_gwp_gw1.C_340302
I
0.739
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.739
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.739
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.739
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.739
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.739
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.729
AGL65
Arabidopsis thaliana
AT1G18750
D
0.729
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.729
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.717
Ca_18082
Cicer arietinum
Ca_18082
I
0.717
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.717
AMTR_s00010p00214260
Amborella trichopoda
AMTR_s00010p00214260
I
0.717
AGL94
Arabidopsis thaliana
AT1G69540
N
0.717
MDP0000146231
Malus domestica
MDP0000146231
I
0.717
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.717
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.717
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.717
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.717
fgenesh1_pg.scaffold_163000049
Physcomitrella patens
fgenesh1_pg.scaffold_163000049
I
0.717
Bra024792
Brassica rapa
Bra024792
I
0.717
MDP0000146415
Malus domestica
MDP0000146415
I
0.711
MDP0000919323
Malus domestica
MDP0000919323
I
0.711
MDP0000773068
Malus domestica
MDP0000773068
I
0.711
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.702