MTR_1g029670 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_1g029670 T254699_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.833 0.833
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.812 0.812
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH40496 MADS box 10 57

Links

Other MADS box family TFs
Other Medicago truncatula TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.875
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.875
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.875
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.875
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.875
Ca_03887 Cicer arietinum Ca_03887 I 0.854
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.854
Ca_13111 Cicer arietinum Ca_13111 I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.833
Cla023547 Citrullus lanatus Cla023547 I 0.833
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.833
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.833
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.833
29648.m001978 Ricinus communis 29648.m001978 I 0.833
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.833
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.833
TCM_035212 Theobroma cacao TCM_035212 I 0.833
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.833
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.833
PI Vitis vinifera VIT_18s0001g01760 I 0.812
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.812
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.812
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.812
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.812
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.812
mgf003143m Mimulus guttatus mgf003143m I 0.812
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.812
mgf008207m Mimulus guttatus mgf008207m I 0.812
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.812
mgf006158m Mimulus guttatus mgf006158m I 0.812
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.812
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.792
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.792
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.792
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.792
Pm004718 Prunus mume Pm004718 I 0.792
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.771
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.771
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.771
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.750
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.750
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.708