MTR_1g038300 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_1g038300 T254700_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.833 0.833
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES59956 MADS box 10 57

Links

Other MADS box family TFs
Other Medicago truncatula TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_22438 Cicer arietinum Ca_22438 I 0.896
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.875
XM_002310609.1 Populus trichocarpa POPTR_0007s07620 I 0.875
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.875
cassava5692.m1 Manihot esculenta cassava5692.m1 I 0.854
30221.m002218 Ricinus communis 30221.m002218 I 0.854
POPTR_0005s09340 Populus trichocarpa POPTR_0005s09340 I 0.854
Gorai.013G069000 Gossypium raimondii Gorai.013G069000 I 0.854
SapurV1A.4660s0010 Salix purpurea SapurV1A.4660s0010 I 0.854
SapurV1A.0333s0300 Salix purpurea SapurV1A.0333s0300 I 0.854
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.854
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.854
TCM_007713 Theobroma cacao TCM_007713 I 0.833
cassava9889.m1 Manihot esculenta cassava9889.m1 I 0.833
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.833
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.833
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.833
MDP0000278738 Malus domestica MDP0000278738 I 0.812
MDP0000128016 Malus domestica MDP0000128016 I 0.812
gene20015-v1.0-hybrid Fragaria vesca gene20015-v1.0-hybrid I 0.812
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.812
TT16 Vitis vinifera VIT_01s0011g01560 I 0.812
GOA Vitis vinifera VIT_02s0025g02350 I 0.792
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.792
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.792
PRUPE_ppa014844mg Prunus persica PRUPE_ppa014844mg I 0.792
TT16 Vitis vinifera VIT_10s0042g00820 I 0.792
Bra026507 Brassica rapa Bra026507 I 0.792
Bo9g014270 Brassica oleracea Bo9g014270 I 0.792
Pm010767 Prunus mume Pm010767 I 0.792
Cla010047 Citrullus lanatus Cla010047 I 0.792
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.792
MDP0000181583 Malus domestica MDP0000181583 I 0.792
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.771
MDP0000233948 Malus domestica MDP0000233948 I 0.771
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.771
GLYMA20G29250 Glycine max GLYMA20G29250 I 0.771
GLYMA09G42061 Glycine max GLYMA09G42061 I 0.771
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.771
PK27158.1 Cannabis sativa PK27158.1 I 0.771
MDP0000179718 Malus domestica MDP0000179718 I 0.758
evm.TU.supercontig_30.148 Carica papaya evm.TU.supercontig_30.148 I 0.750
Pm002166 Prunus mume Pm002166 I 0.750
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.750
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.750
GLYMA09G27461 Glycine max GLYMA09G27461 I 0.750
MDP0000209705 Malus domestica MDP0000209705 I 0.750
TT16 Arabidopsis thaliana AT5G23260 I 0.750
TT16 Arabidopsis lyrata fgenesh2_kg.6__2319__AT5G23260.2 I 0.750
Bo7g097810 Brassica oleracea Bo7g097810 I 0.750
GLYMA10G38580 Glycine max GLYMA10G38580 I 0.750
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.750
chr5.CM0953.150.nc Lotus japonicus chr5.CM0953.150.nc I 0.750
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.750
Ca_04518 Cicer arietinum Ca_04518 I 0.750
PK20651.1 Cannabis sativa PK20651.1 I 0.750
Ca_12416 Cicer arietinum Ca_12416 I 0.750
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.750
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.750
mgf008634m Mimulus guttatus mgf008634m I 0.750
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.750
GLYMA20G00401 Glycine max GLYMA20G00401 I 0.750
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.750
Bra013028 Brassica rapa Bra013028 I 0.750
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.729
Bo2g160980 Brassica oleracea Bo2g160980 I 0.729
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.729
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.729
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.729
mgf022278m Mimulus guttatus mgf022278m I 0.729
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.729
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.729
Ca_06280 Cicer arietinum Ca_06280 I 0.729
POPTR_0015s14950 Populus trichocarpa POPTR_0015s14950 I 0.729
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.729
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.729
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.729
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.729
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.729
MTR_1g101970 Medicago truncatula MTR_1g101970 I 0.729
Bra029365 Brassica rapa Bra029365 I 0.729
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.729
Ca_01491 Cicer arietinum Ca_01491 I 0.729
Ca_21060 Cicer arietinum Ca_21060 I 0.729
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.729
GLYMA16G32540 Glycine max GLYMA16G32540 I 0.729
SVP Arabidopsis thaliana AT2G22540 D 0.723
PK10594.1 Cannabis sativa PK10594.1 I 0.708
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.708
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.708
PK11571.1 Cannabis sativa PK11571.1 I 0.708
LjT09J10.60.nc Lotus japonicus LjT09J10.60.nc I 0.708
evm.TU.supercontig_3486.1 Carica papaya evm.TU.supercontig_3486.1 I 0.708
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.708
Gorai.006G045100 Gossypium raimondii Gorai.006G045100 I 0.708
MDP0000149676 Malus domestica MDP0000149676 I 0.708
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.708
orange1.1g040075m.g Citrus sinensis orange1.1g040075m.g I 0.708
O82699_MALDO Malus domestica O82699_MALDO D 0.708
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.708
ANR1 Arabidopsis thaliana AT2G14210 I 0.708
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.708
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.708
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.708
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.708
Bo8g101000 Brassica oleracea Bo8g101000 I 0.708
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.708
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.708
Bra038511 Brassica rapa Bra038511 I 0.708
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.708
Solyc01g093960.2 Solanum lycopersicum Solyc01g093960.2 I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.708
TCM_015674 Theobroma cacao TCM_015674 I 0.708
TCM_007324 Theobroma cacao TCM_007324 I 0.708
TCM_000992 Theobroma cacao TCM_000992 I 0.708
Solyc01g106170.2 Solanum lycopersicum Solyc01g106170.2 I 0.708
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.708
PGSC0003DMG400000136 Solanum tuberosum PGSC0003DMG400000136 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.708
OLONG_005831 Oryza longistaminata OLONG_005831 I 0.708
OB04G32080 Oryza brachyantha OB04G32080 I 0.708
MTR_6g464720 Medicago truncatula MTR_6g464720 I 0.708
Ciclev10016394m.g Citrus clementina Ciclev10016394m.g I 0.708
TCM_034501 Theobroma cacao TCM_034501 I 0.708
Aquca_013_00477 Aquilegia coerulea Aquca_013_00477 I 0.708
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
mgf000495m Mimulus guttatus mgf000495m I 0.708
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.708
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.708
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.708
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.708
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.708
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.708
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.708
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.708
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.708
SVP Vitis vinifera VIT_00s0313g00070 I 0.708
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
Cla014322 Citrullus lanatus Cla014322 I 0.708
Pm021962 Prunus mume Pm021962 I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.708
AMTR_s00001p00267050 Amborella trichopoda AMTR_s00001p00267050 I 0.708
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.702
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.702
PK26778.1 Cannabis sativa PK26778.1 I 0.700