CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_1g063160
(
Medicago truncatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
MTR_1g063160
T254705_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH42186
MADS box
10
57
RVKDPNTRQITFSKRRTGLFKKANELSILCGAEAAIVVFSPGNNPYSF
Links
Other
MADS box
family TFs
Other
Medicago truncatula
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_05023
Cicer arietinum
Ca_05023
I
0.917
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.917
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.896
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.896
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.896
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.896
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.896
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.875
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.875
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.854
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.854
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.854
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.854
Ca_24185
Cicer arietinum
Ca_24185
I
0.833
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.833
chr3.CM0059.60.nd
Lotus japonicus
chr3.CM0059.60.nd
N
0.812
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.812
TCM_029518
Theobroma cacao
TCM_029518
I
0.750
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.750
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.750
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.750
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.729
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.729
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.729
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.729
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.729
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.729
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.729
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.729
AGL91
Arabidopsis thaliana
AT3G66656
D
0.729
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.729
Bra021910
Brassica rapa
Bra021910
I
0.729
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.729
29693.m002039
Ricinus communis
29693.m002039
I
0.729
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.708
MDP0000274606
Malus domestica
MDP0000274606
N
0.708
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.708
AGL29
Arabidopsis thaliana
AT2G34440
I
0.708
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.708
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.708
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.708
Pm030655
Prunus mume
Pm030655
I
0.708
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.708
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.708
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.708
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.708
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.708
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.708