MTR_4g084740 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_4g084740 T254780_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.729 0.729
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.708 0.708
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.708 0.708
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.708 0.708
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH30865 MADS box 10 57

Links

Other MADS box family TFs
Other Medicago truncatula TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_24539 Cicer arietinum Ca_24539 I 0.917
Si008439m.g Setaria italica Si008439m.g I 0.917
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.917
29908.m005982 Ricinus communis 29908.m005982 I 0.917
Pm019181 Prunus mume Pm019181 I 0.917
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.917
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.896
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.896
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.896
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.896
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.896
TCM_001182 Theobroma cacao TCM_001182 I 0.896
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.896
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.896
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.896
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.896
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.896
MDP0000243965 Malus domestica MDP0000243965 I 0.896
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.896
TCM_034970 Theobroma cacao TCM_034970 I 0.896
AGL104 Arabidopsis thaliana AT1G22130 I 0.896
Bo8g071330 Brassica oleracea Bo8g071330 I 0.896
Bo7g060150 Brassica oleracea Bo7g060150 I 0.896
Bra016386 Brassica rapa Bra016386 I 0.896
Bra012308 Brassica rapa Bra012308 I 0.896
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.875
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.875
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.875
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.875
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.875
AGL66 Arabidopsis thaliana AT1G77980 I 0.875
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.875
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.875
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.875
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.875
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.875
Cla014721 Citrullus lanatus Cla014721 I 0.875
OB08G26170 Oryza brachyantha OB08G26170 I 0.875
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.875
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.875
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.875
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.875
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.875
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.875
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.875
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.875
Bo6g121640 Brassica oleracea Bo6g121640 I 0.854
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.854
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.854
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.854
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.854
Bra015643 Brassica rapa Bra015643 I 0.854
OBART06G07860 Oryza barthii OBART06G07860 I 0.854
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.854
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.854
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.854
OS08G0494100 Oryza sativa OS08G0494100 I 0.854
OS06G0223300 Oryza sativa OS06G0223300 I 0.854
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.854
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.854
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.854
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.854
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.854
OBART08G19110 Oryza barthii OBART08G19110 I 0.854
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.854
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.854
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.854
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.854
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.854
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.833
Pm005355 Prunus mume Pm005355 I 0.833
30170.m013776 Ricinus communis 30170.m013776 I 0.833
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.833
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.833
Si013985m.g Setaria italica Si013985m.g I 0.833
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.833
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.833
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.833
OB06G17440 Oryza brachyantha OB06G17440 I 0.833
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.833
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.833
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.812
F775_03584 Aegilops tauschii F775_03584 I 0.812
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.812
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.812
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.812
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.812
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.812
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.812
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.792
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.792
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.792
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.792
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.792
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.792
MDP0000152821 Malus domestica MDP0000152821 I 0.792
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.792
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.792
Ca_01572 Cicer arietinum Ca_01572 I 0.792
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.792
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.792
MTR_5g061740 Medicago truncatula MTR_5g061740 N 0.778
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.771
mgf017317m Mimulus guttatus mgf017317m I 0.771
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.771
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.771
TCM_034757 Theobroma cacao TCM_034757 I 0.771
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.771
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.771
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.771
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.771
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.771
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.771
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.750
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.750
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.750
mgf019100m Mimulus guttatus mgf019100m N 0.750
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.729
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.729
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.729
Solyc03g019710.2 Solanum lycopersicum Solyc03g019710.2 I 0.729
Q40172_SOLLC Solanum lycopersicum Q40172_SOLLC I 0.729
MDP0000268317 Malus domestica MDP0000268317 I 0.729
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.729
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.729
AGL67 Arabidopsis thaliana AT1G77950 D 0.729
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.708
O82698_MALDO Malus domestica O82698_MALDO D 0.708
PK21701.1 Cannabis sativa PK21701.1 I 0.708
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
Ca_06280 Cicer arietinum Ca_06280 I 0.708
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.708
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.708
PRUPE_ppa011140mg Prunus persica PRUPE_ppa011140mg I 0.708
Solyc05g012020.2 Solanum lycopersicum Solyc05g012020.2 D 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.708
GSMUA_Achr2G06250_001 Musa acuminata GSMUA_Achr2G06250_001 I 0.708
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
TCM_014051 Theobroma cacao TCM_014051 I 0.708
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.708
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
Cucsa.251170 Cucumis sativus Cucsa.251170 I 0.708
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
Bo6g121610 Brassica oleracea Bo6g121610 I 0.708
Pm004218 Prunus mume Pm004218 I 0.708
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
Cla006333 Citrullus lanatus Cla006333 I 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
SELMODRAFT_449788 Selaginella moellendorffii SELMODRAFT_449788 I 0.702
SELMODRAFT_451128 Selaginella moellendorffii SELMODRAFT_451128 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700