MTR_4g108720 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_4g108720 T254787_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH31938 MADS box 10 55

Links

Other MADS box family TFs
Other Medicago truncatula TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.833
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.708
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.812
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.792
AGL65 Arabidopsis thaliana AT1G18750 D 0.812
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.826
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.783
Bo6g109050 Brassica oleracea Bo6g109050 I 0.717
Bo7g080890 Brassica oleracea Bo7g080890 I 0.717
Bo8g068060 Brassica oleracea Bo8g068060 I 0.875
Bo8g104060 Brassica oleracea Bo8g104060 I 0.875
Bo9g072860 Brassica oleracea Bo9g072860 N 0.717
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.739
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.812
Bra004393 Brassica rapa Bra004393 I 0.717
Bra016544 Brassica rapa Bra016544 I 0.875
Bra024792 Brassica rapa Bra024792 I 0.717
Bra025685 Brassica rapa Bra025685 I 0.894
Bra031049 Brassica rapa Bra031049 I 0.875
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.826
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.739
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.792
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.792
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.739
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.717
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.761
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.761
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.812
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.833
Ca_16376 Cicer arietinum Ca_16376 I 0.739
Ca_18082 Cicer arietinum Ca_18082 I 0.717
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.936
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.792
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.761
Cla010361 Citrullus lanatus Cla010361 I 0.783
Cla018884 Citrullus lanatus Cla018884 I 0.761
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.761
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.812
F775_13266 Aegilops tauschii F775_13266 I 0.826
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.826
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.935
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.821
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.812
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.783
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.723
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.783
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.826
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.833
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.761
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.761
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.854
MDP0000146231 Malus domestica MDP0000146231 I 0.739
MDP0000146415 Malus domestica MDP0000146415 I 0.756
MDP0000147667 Malus domestica MDP0000147667 I 0.739
MDP0000193129 Malus domestica MDP0000193129 I 0.771
MDP0000773068 Malus domestica MDP0000773068 I 0.756
MDP0000919323 Malus domestica MDP0000919323 I 0.756
mgf000945m Mimulus guttatus mgf000945m I 0.708
mgf004425m Mimulus guttatus mgf004425m I 0.708
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.804
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.717
OBART11G21780 Oryza barthii OBART11G21780 N 0.804
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.826
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.826
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.783
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.761
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.792
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.761
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.804
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.804
OS11G0658700 Oryza sativa OS11G0658700 N 0.804
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.809
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.809
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.826
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.830
PK03147.1 Cannabis sativa PK03147.1 I 0.761
PK21701.1 Cannabis sativa PK21701.1 I 0.812
Pm006479 Prunus mume Pm006479 I 0.739
Pm024895 Prunus mume Pm024895 I 0.804
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.761
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.804
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.739
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.783
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.826
Si028357m.g Setaria italica Si028357m.g N 0.804
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.708
TCM_011687 Theobroma cacao TCM_011687 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.833
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.739
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.854
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.812
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.826
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.826
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.826
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.826