NBO_73g0004 (Nosema bombycis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 NBO_73g0004 T254851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.708 0.708
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.708 0.708
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.708 0.708
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.708 0.708
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.708 0.708
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.708 0.708
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.708 0.708
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.708 0.708
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.708 0.708
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.708 0.708
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.708 0.708
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.708 0.708
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.708 0.708
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.708 0.708
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.708 0.708
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.708 0.708
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.708 0.708
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.708 0.708
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.708 0.708
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.708 0.708
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.708 0.708
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.708 0.708
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.708 0.708
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.708 0.708
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOB13438 MADS box 100 147

Links

Other MADS box family TFs
Other Nosema bombycis TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NBO_81g0015 Nosema bombycis NBO_81g0015 I 1.000
NBO_404g0004 Nosema bombycis NBO_404g0004 I 1.000
SLOPH_1335 Spraguea lophii SLOPH_1335 I 0.917
EDEG_01732 Edhazardia aedis EDEG_01732 I 0.896
Eint_071710 Encephalitozoon intestinalis Eint_071710 N 0.896
CAD25705 Encephalitozoon cuniculi CAD25705 N 0.896
EHEL_071720 Encephalitozoon hellem EHEL_071720 N 0.875
EROM_071660 Encephalitozoon romaleae EROM_071660 N 0.875
H311_03229 Anncaliia algerae H311_03229 I 0.875
H311_03668 Anncaliia algerae H311_03668 I 0.875
THOM_1181 Trachipleistophora hominis THOM_1181 I 0.854
VCUG_02078 Vavraia culicis VCUG_02078 I 0.854
M896_081720 Ordospora colligata M896_081720 N 0.854
NCER_102270 Nosema ceranae NCER_102270 I 0.833
SRF Vicugna pacos ENSVPAG00000008912 I 0.808
SRF Gorilla gorilla ENSGGOG00000006293 I 0.808
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.808
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.808
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.808
MESCA001358 Megaselia scalaris MESCA001358 I 0.778
DI09_81p70 Microsporidia sp DI09_81p70 I 0.750
NEPG_02192 Nematocida parisii ertm1 NEPG_02192 I 0.750
SINV23954 Solenopsis invicta SINV23954 I 0.741
RHTO_04199 Rhodosporidium toruloides RHTO_04199 I 0.729
RHTO_07423 Rhodosporidium toruloides RHTO_07423 I 0.729
BATDEDRAFT_7506 Batrachochytrium dendrobatidis BATDEDRAFT_7506 I 0.729
MVLG_06278 Microbotryum violaceum MVLG_06278 I 0.729
gw1.5.808.1 Sporobolomyces roseus gw1.5.808.1 I 0.729
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.729
TriadG59812 Trichoplax adhaerens TriadG59812 I 0.729
MCINX015635 Melitaea cinxia MCINX015635 I 0.714
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.708
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.708
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I 0.708
WBGene00243571 Onchocerca volvulus WBGene00243571 I 0.708
PGTG_07157 Puccinia graminis PGTG_07157 I 0.708
LOAG_01601 Loa loa LOAG_01601 I 0.708
MVLG_04297 Microbotryum violaceum MVLG_04297 I 0.708
ML154140a Mnemiopsis leidyi ML154140a I 0.708
MELLADRAFT_106990 Melampsora laricipopulina MELLADRAFT_106990 I 0.708
L804_05554 Cryptococcus gattii L804_05554 I 0.708
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.708
Smp_097730 Schistosoma mansoni Smp_097730 I 0.708
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.708
NV18787 Nasonia vitripennis NV18787 I 0.708
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.708
TC004911 Tribolium castaneum TC004911 I 0.708
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.708
nLs.2.1.2.g09548 Litomosoides sigmodontis nLs.2.1.2.g09548 I 0.708
nOo.2.0.1.g11137 Onchocerca ochengi nOo.2.0.1.g11137 I 0.708
PTRK_0001139200 Parastrongyloides trichosuri PTRK_0001139200 I 0.708
nDi.2.2.2.g03920 Dirofilaria immitis nDi.2.2.2.g03920 I 0.708
nAv.1.0.1.g08666 Acanthocheilonema viteae nAv.1.0.1.g08666 I 0.708
DME_0000010001 Dracunculus medinensis DME_0000010001 I 0.708
EEL_0000867301 Elaeophora elaphi EEL_0000867301 I 0.708
GPUH_0001673101 Gongylonema pulchrum GPUH_0001673101 I 0.708
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.708
SCUD_0000460501 Schistosoma curassoni SCUD_0000460501 I 0.708
SSTP_0000932200 Strongyloides stercoralis SSTP_0000932200 I 0.708
SVE_1017000 Strongyloides venezuelensis SVE_1017000 I 0.708
TCLT_0000849901 Thelazia callipaeda TCLT_0000849901 I 0.708
SROB_0002013401 Schistosoma rodhaini SROB_0002013401 I 0.708
SPAL_0000748100 Strongyloides papillosus SPAL_0000748100 I 0.708
SMRZ_0002507801 Schistosoma margrebowiei SMRZ_0002507801 I 0.708
SMTD_0001950801 Schistosoma mattheei SMTD_0001950801 I 0.708
BTMF_0000835601 Brugia timori BTMF_0000835601 I 0.708
ASU_14961 Ascaris suum ASU_14961 I 0.708
L798_08800 Zootermopsis nevadensis L798_08800 I 0.708
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.708
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.708
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.708
estExt_fgeneshDP_kg.C_1450001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1450001 I 0.708
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.708
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.708
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.708
EFA85834.1 Polysphondylium pallidum EFA85834.1 I 0.708
A_01192 Schistosoma haematobium A_01192 I 0.708
ASIM_0002132201 Anisakis simplex ASIM_0002132201 I 0.708
ASU_11865 Ascaris suum ASU_11865 I 0.708
MDOA002443 Musca domestica MDOA002443 I 0.708
gw1.10.360.1 Tremella mesenterica gw1.10.360.1 I 0.708
srf Xenopus tropicalis XB-GENE-482036 I 0.708
srf.L Xenopus laevis XB-GENE-864819 I 0.708
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.708
GD11852 Drosophila simulans FBgn0183591 I 0.708
SRF Equus caballus ENSECAG00000009068 I 0.708
SRF Felis catus ENSFCAG00000025180 I 0.708
SRF Homo sapiens ENSG00000112658 D 0.708
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.708
srfb Danio rerio ENSDARG00000102867 I 0.708
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.708
srfa Danio rerio ENSDARG00000053918 I 0.708
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.708
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.708
SRF Macaca mulatta ENSMMUG00000000033 I 0.708
SRF Monodelphis domestica ENSMODG00000018981 I 0.708
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.708
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.708
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.708
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.708
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.708
SRF Callithrix jacchus ENSCJAG00000005223 I 0.708
SRF Canis familiaris ENSCAFG00000001829 I 0.708
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.708
Aqu1.224560 Amphimedon queenslandica Aqu1.224560 I 0.708
Bm3022 Brugia malayi Bm3022 I 0.708
ACEP12187 Atta cephalotes ACEP12187 I 0.708
WUBG_06152 Wuchereria bancrofti WUBG_06152 I 0.708
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.708
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.708
Bm7708 Brugia malayi Bm7708 I 0.708
CNN00060 Cryptococcus neoformans CNN00060 I 0.708
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.708
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.708
SRF Bos taurus ENSBTAG00000012777 I 0.708
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.708
SRF Anolis carolinensis ENSACAG00000004798 I 0.708
srfA Dictyostelium discoideum DDB_G0281387 D 0.708
E5Q_02524 Mixia osmundae E5Q_02524 I 0.708
Srf Mus musculus ENSMUSG00000015605 D 0.708
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.708
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.708
GF11392 Drosophila ananassae FBgn0088432 I 0.708
GG22961 Drosophila erecta FBgn0115118 I 0.708
bs Drosophila melanogaster FBgn0004101 D 0.708
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.708
SRF Takifugu rubripes ENSTRUG00000017531 I 0.708
SRF Tursiops truncatus ENSTTRG00000007017 I 0.708
GH20989 Drosophila grimshawi FBgn0128451 I 0.708
GI21322 Drosophila mojavensis FBgn0144052 I 0.708
GK22205 Drosophila willistoni FBgn0224190 I 0.708
GE14398 Drosophila yakuba FBgn0232006 I 0.708
GB47234 Apis mellifera GB47234 I 0.708
GJ21595 Drosophila virilis FBgn0208714 I 0.708
CAOG_01457 Capsaspora owczarzaki CAOG_01457 I 0.708
GL20046 Drosophila persimilis FBgn0157643 I 0.708
GM11854 Drosophila sechellia FBgn0166795 I 0.708
srfa Takifugu rubripes ENSTRUG00000011448 I 0.708
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.708
SRF Oryzias latipes ENSORLG00000013036 I 0.708
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.708
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.708
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.708
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.708
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.708
SRF Otolemur garnettii ENSOGAG00000029623 I 0.708
J056_002827 Wallemia ichthyophaga J056_002827 I 0.708
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.708
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.708
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.708
SRF Sus scrofa ENSSSCG00000001661 I 0.708
Srf Rattus norvegicus ENSRNOG00000018232 I 0.708
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.708
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.708
SRF Pan troglodytes ENSPTRG00000018189 I 0.708
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.700