NEUTE1DRAFT_70297 (Neurospora tetrasperma)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 NEUTE1DRAFT_70297 T254872_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.917 0.917
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.875 0.875
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.875 0.875
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.875 0.875
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.875 0.875
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.875 0.875
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.875 0.875
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.812 0.812
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.812 0.812
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.812 0.812
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.812 0.812
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.812 0.812
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.812 0.812
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.812 0.812
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.812 0.812
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.812 0.812
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.812 0.812
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.812 0.812
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.812 0.812
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.812 0.812
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.812 0.812
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.812 0.812
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.812 0.812
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.812 0.812
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.812 0.812
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.812 0.812
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.812 0.812
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.812 0.812
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.812 0.812
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.771 0.771
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.771 0.771
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGO51503 MADS box 64 111

Links

Other MADS box family TFs
Other Neurospora tetrasperma TFs

460 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF027 Arabidopsis thaliana AT1G12630 D 0.000
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.000
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.000
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.000
30147.m014311 Ricinus communis 30147.m014311 I 0.000
Pm023766 Prunus mume Pm023766 I 0.000
Cla011673 Citrullus lanatus Cla011673 I 0.000
Cla004491 Citrullus lanatus Cla004491 I 0.000
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I 0.000
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.000
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.000
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.000
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.000
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.000
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.000
MDP0000189347 Malus domestica MDP0000189347 I 0.000
MDP0000262710 Malus domestica MDP0000262710 I 0.000
TCM_016176 Theobroma cacao TCM_016176 I 0.000
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.000
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.000
Bra027616 Brassica rapa Bra027616 I 0.000
Bra027615 Brassica rapa Bra027615 I 0.000
Bo9g036590 Brassica oleracea Bo9g036590 I 0.000
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.000
Bo9g028820 Brassica oleracea Bo9g028820 I 0.000
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.000
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.000
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I 0.000
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.000
MDP0000400129 Malus domestica MDP0000400129 N 0.000
gene32380-v1.0-hybrid Fragaria vesca gene32380-v1.0-hybrid N 0.000
SapurV1A.0282s0060 Salix purpurea SapurV1A.0282s0060 N 0.000
GLYMA01G42510 Glycine max GLYMA01G42510 N 0.000
PRUPE_ppa022712mg Prunus persica PRUPE_ppa022712mg N 0.000
PRUPE_ppa021384mg Prunus persica PRUPE_ppa021384mg N 0.000
POPTR_0001s08740 Populus trichocarpa POPTR_0001s08740 N 0.000
Pm023767 Prunus mume Pm023767 N 0.000
Pm023768 Prunus mume Pm023768 N 0.000
Cucsa.041590 Cucumis sativus Cucsa.041590 N 0.000
GLYMA17G14100 Glycine max GLYMA17G14100 N 0.000
GLYMA05G03540 Glycine max GLYMA05G03540 N 0.000
chr2.CM0304.660.nd Lotus japonicus chr2.CM0304.660.nd N 0.000