OBART03G39990 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART03G39990 T254970_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.721 0.721
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.721 0.721
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.721 0.721
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G39990.1 MADS box 1 43

Links

Other MADS box family TFs
Other Oryza barthii TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI03G41790 Oryza rufipogon ORUFI03G41790 I 0.915
OS03G0834466 Oryza sativa OS03G0834466 I 0.854
OS01G0903800 Oryza sativa OS01G0903800 I 0.837
OBART01G40880 Oryza barthii OBART01G40880 I 0.814
LPERR01G34270 Leersia perrieri LPERR01G34270 I 0.791
OB01G48510 Oryza brachyantha OB01G48510 I 0.791
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.767
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.767
OBART01G39740 Oryza barthii OBART01G39740 I 0.767
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.767
MADS21 Oryza sativa OS01G0886200 I 0.767
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.767
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.767
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.767
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.767
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.767
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.744
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.744
Si002551m.g Setaria italica Si002551m.g I 0.744
Sb03g042080 Sorghum bicolor Sb03g042080 I 0.744
Traes_4DL_008F8BBFA Triticum aestivum Traes_4DL_008F8BBFA I 0.727
Traes_5DS_16243E52C Triticum aestivum Traes_5DS_16243E52C I 0.721
Traes_5AS_7BFB385EF Triticum aestivum Traes_5AS_7BFB385EF I 0.721
Si019880m.g Setaria italica Si019880m.g I 0.721
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.721
Sb10g004390 Sorghum bicolor Sb10g004390 I 0.721
Si007226m.g Setaria italica Si007226m.g I 0.721
Traes_7AS_C25A349A9 Triticum aestivum Traes_7AS_C25A349A9 I 0.721
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.721
TRIUR3_28215 Triticum urartu TRIUR3_28215 I 0.721
MDP0000268317 Malus domestica MDP0000268317 I 0.721
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.721
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.721
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.721
Lus10009481.g Linum usitatissimum Lus10009481.g I 0.721
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.721
Pm021962 Prunus mume Pm021962 I 0.721
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.721
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.721
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.721
TRIUR3_24374 Triticum urartu TRIUR3_24374 I 0.721
POPTR_0015s14010 Populus trichocarpa POPTR_0015s14010 I 0.721
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.721
OLONG_006914 Oryza longistaminata OLONG_006914 I 0.721
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.721
OMERI12G04040 Oryza meridionalis OMERI12G04040 I 0.721
OGLUM12G07150 Oryza glumaepatula OGLUM12G07150 I 0.721
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.721
LPERR12G05240 Leersia perrieri LPERR12G05240 I 0.721
OB12G15620 Oryza brachyantha OB12G15620 I 0.721
LPERR06G03790 Leersia perrieri LPERR06G03790 I 0.721
OBART12G05940 Oryza barthii OBART12G05940 I 0.721
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.721
ONIVA12G05640 Oryza nivara ONIVA12G05640 I 0.721
Bo7g116760 Brassica oleracea Bo7g116760 I 0.721
Bo1g007520 Brassica oleracea Bo1g007520 I 0.721
MADS13 Oryza sativa OS12G0207000 I 0.721
MLOC_57890 Hordeum vulgare MLOC_57890 I 0.721
Bra011509 Brassica rapa Bra011509 I 0.721
ORUFI12G06810 Oryza rufipogon ORUFI12G06810 I 0.721
F775_30822 Aegilops tauschii F775_30822 I 0.721
OPUNC12G05660 Oryza punctata OPUNC12G05660 I 0.721
BRADI4G40350 Brachypodium distachyon BRADI4G40350 I 0.721
Bra017638 Brassica rapa Bra017638 I 0.721
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.721