OBART04G13770 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART04G13770 T254976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.854 0.854
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.771 0.771
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART04G13770.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza barthii TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Q40591_TOBAC Nicotiana tabacum Q40591_TOBAC D 0.729
MLOC_61901 Hordeum vulgare MLOC_61901 D 0.708
Q41829_MAIZE Zea mays Q41829_MAIZE D 0.708
Q9FR84_MAIZE Zea mays Q9FR84_MAIZE D 0.708
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.729
Q9ATE8_PETHY Petunia x hybrida Q9ATE8_PETHY D 0.729
MADS26 Oryza sativa OS08G0112700 D 0.771
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.708
MADS50 Oryza sativa OS03G0122600 D 0.729
AGL12 Arabidopsis thaliana AT1G71692 D 0.854
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
Traes_2DL_903A29CBA Triticum aestivum Traes_2DL_903A29CBA I 0.708
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.958
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.958
Traes_2BL_26F24E716 Triticum aestivum Traes_2BL_26F24E716 I 0.708
Traes_2AL_20C2D79E1 Triticum aestivum Traes_2AL_20C2D79E1 I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
TCM_036568 Theobroma cacao TCM_036568 I 0.875
Ca_25684 Cicer arietinum Ca_25684 I 0.708
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.830
Ca_19954 Cicer arietinum Ca_19954 I 0.875
Ca_16423 Cicer arietinum Ca_16423 I 0.708
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.854
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
TRIUR3_21876 Triticum urartu TRIUR3_21876 I 0.708
TRIUR3_18962 Triticum urartu TRIUR3_18962 I 0.708
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.830
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.958
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.830
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.830
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.854
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.708
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.875
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.708
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.854
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.729
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.854
PGSC0003DMG400028442 Solanum tuberosum PGSC0003DMG400028442 I 0.708
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.708
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.708
OS05G0203800 Oryza sativa OS05G0203800 I 0.708
MADS31 Oryza sativa OS04G0614100 I 0.729
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.830
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.729
Solyc02g071730.2 Solanum lycopersicum Solyc02g071730.2 I 0.708
Si038299m.g Setaria italica Si038299m.g I 0.729
Si038257m.g Setaria italica Si038257m.g I 0.750
Si030802m.g Setaria italica Si030802m.g I 0.708
Si024640m.g Setaria italica Si024640m.g I 0.708
Si014419m.g Setaria italica Si014419m.g I 0.792
Si012632m.g Setaria italica Si012632m.g I 0.936
Si007187m.g Setaria italica Si007187m.g I 0.729
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.708
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.792
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.875
Sb02g001090 Sorghum bicolor Sb02g001090 I 0.708
Sb01g049020 Sorghum bicolor Sb01g049020 I 0.708
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.708
Cla012709 Citrullus lanatus Cla012709 I 0.854
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.833
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.708
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.936
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.896
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.708
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.708
Pavir.Ba03990 Panicum virgatum Pavir.Ba03990 I 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.750
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.854
MDP0000316609 Malus domestica MDP0000316609 I 0.833
MDP0000193953 Malus domestica MDP0000193953 I 0.833
MDP0000192806 Malus domestica MDP0000192806 I 0.833
MDP0000179718 Malus domestica MDP0000179718 I 0.727
MDP0000144597 Malus domestica MDP0000144597 I 0.708
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.708
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.854
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.833
chr2.CM0099.100.nc Lotus japonicus chr2.CM0099.100.nc I 0.708
PK26896.1 Cannabis sativa PK26896.1 I 0.851
PK19764.1 Cannabis sativa PK19764.1 I 0.708
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.851
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.854
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.854
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.854
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.708
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.729
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.792
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.729
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.750
MDP0000144516 Malus domestica MDP0000144516 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.833
Aquca_035_00266 Aquilegia coerulea Aquca_035_00266 I 0.708
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.787
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.729
mgf017448m Mimulus guttatus mgf017448m I 0.854
mgf006616m Mimulus guttatus mgf006616m I 0.708
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.854
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.894
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.729
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.854
29907.m000663 Ricinus communis 29907.m000663 I 0.812
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.854
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.854
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.750
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.708
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.708
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.875
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.875
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.896
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.812
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
evm.TU.supercontig_3.196 Carica papaya evm.TU.supercontig_3.196 I 0.708
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.854
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.896
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.875
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
Pm004239 Prunus mume Pm004239 I 0.830
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.771
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.729
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.787
GRMZM2G072582 Zea mays GRMZM2G072582 I 0.708
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.750
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.894
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.750
GRMZM2G010669 Zea mays GRMZM2G010669 I 0.708
GLYMA18G12590 Glycine max GLYMA18G12590 I 0.708
GLYMA14G03100 Glycine max GLYMA14G03100 I 0.708
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.854
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.854
GLYMA08G42300 Glycine max GLYMA08G42300 I 0.708
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.708
GLYMA02G45730 Glycine max GLYMA02G45730 I 0.708
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.792
GRMZM2G148693 Zea mays GRMZM2G148693 I 0.708
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.750
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.708
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.830
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.729
GSMUA_Achr5G06590_001 Musa acuminata GSMUA_Achr5G06590_001 I 0.708
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.729
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
GSMUA_Achr11G21460_001 Musa acuminata GSMUA_Achr11G21460_001 I 0.729
GSMUA_Achr11G19540_001 Musa acuminata GSMUA_Achr11G19540_001 I 0.708
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.851
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
GSMUA_Achr10G14160_001 Musa acuminata GSMUA_Achr10G14160_001 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
GRMZM2G359952 Zea mays GRMZM2G359952 I 0.708
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.854
F775_52406 Aegilops tauschii F775_52406 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
Bra007972 Brassica rapa Bra007972 I 0.854
Bra003919 Brassica rapa Bra003919 I 0.830
Bo9g093920 Brassica oleracea Bo9g093920 I 0.708
Bo6g113110 Brassica oleracea Bo6g113110 I 0.854
Bo6g094120 Brassica oleracea Bo6g094120 I 0.830
Bo4g108190 Brassica oleracea Bo4g108190 I 0.708
Bo2g073010 Brassica oleracea Bo2g073010 I 0.854
MADS56 Oryza indica BGIOSGA033356 I 0.708
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.771
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.708
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.729
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.967
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.979
Bra014552 Brassica rapa Bra014552 I 0.708
Bra016128 Brassica rapa Bra016128 I 0.875
Bra029424 Brassica rapa Bra029424 I 0.708
F775_26271 Aegilops tauschii F775_26271 I 0.830
F775_08627 Aegilops tauschii F775_08627 I 0.729
F775_05799 Aegilops tauschii F775_05799 I 0.958
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.708
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.936
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.729
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.729
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.833
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.729
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.708
BRADI2G06330 Brachypodium distachyon BRADI2G06330 I 0.708
BRADI1G59250 Brachypodium distachyon BRADI1G59250 I 0.729
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.830
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.708
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.771
ONIVA05G07370 Oryza nivara ONIVA05G07370 I 0.708
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.979
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.933
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.729
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.708
OMERI05G05900 Oryza meridionalis OMERI05G05900 I 0.708
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.729
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.958
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.979
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.729
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.947
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.979
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.729
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.979
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.729
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.979
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.979
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.729
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.708
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.708
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.771
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.729
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.722
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.729
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.830
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.729
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.708
OLONG_018464 Oryza longistaminata OLONG_018464 I 0.708
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.708
OB08G11080 Oryza brachyantha OB08G11080 I 0.830
OB04G21020 Oryza brachyantha OB04G21020 I 0.979
OB03G11760 Oryza brachyantha OB03G11760 I 0.729
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.875
MTR_3g452380 Medicago truncatula MTR_3g452380 I 0.708
MLOC_57700 Hordeum vulgare MLOC_57700 I 0.708
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.830
MLOC_5375 Hordeum vulgare MLOC_5375 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.708
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.830
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.708
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.708
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.708
OB10G24040 Oryza brachyantha OB10G24040 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.729
OBART04G13800 Oryza barthii OBART04G13800 I 0.979
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.771
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.729
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.708
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.771
OGLUM05G06900 Oryza glumaepatula OGLUM05G06900 I 0.708
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.729
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.979
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.958
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.729
OBART10G16960 Oryza barthii OBART10G16960 I 0.708
OBART08G00930 Oryza barthii OBART08G00930 I 0.771
OBART05G06600 Oryza barthii OBART05G06600 I 0.708
OBART04G25610 Oryza barthii OBART04G25610 I 0.729
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.979