OBART04G13770 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART04G13770 T254976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.854 0.854
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.771 0.771
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART04G13770.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza barthii TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
repo Drosophila melanogaster FBgn0011701 D 0.000
PPAI009709 Phlebotomus papatasi PPAI009709 I 0.000
LLOJ008217 Lutzomyia longipalpis LLOJ008217 I 0.000
LLOJ004353 Lutzomyia longipalpis LLOJ004353 I 0.000
BGLB003458 Biomphalaria glabrata BGLB003458 I 0.000
ASTEI04375 Anopheles stephensi ASTEI04375 I 0.000
ASIS022368 Anopheles sinensis ASIS022368 I 0.000
ASIS004766 Anopheles sinensis ASIS004766 I 0.000
AQUA001638 Anopheles quadriannulatus AQUA001638 I 0.000
AMIN000180 Anopheles minimus AMIN000180 I 0.000
ALUE_0001238401 Ascaris lumbricoides ALUE_0001238401 I 0.000
ACAC_0000394201 Angiostrongylus cantonensis ACAC_0000394201 I 0.000
ALUE_0001765001 Ascaris lumbricoides ALUE_0001765001 I 0.000
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0 I 0.000
augustus_masked-nMf.1.1.scaf00990-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00990-processed-gene-0.2 I 0.000
ASIM_0001653501 Anisakis simplex ASIM_0001653501 I 0.000
ASIM_0001502101 Anisakis simplex ASIM_0001502101 I 0.000
ASIM_0000400001 Anisakis simplex ASIM_0000400001 I 0.000
ANCDUO_14705 Ancylostoma duodenale ANCDUO_14705 I 0.000
ANCDUO_02875 Ancylostoma duodenale ANCDUO_02875 I 0.000
ANCCEY_05038 Ancylostoma ceylanicum ANCCEY_05038 I 0.000
AMAM011118 Anopheles maculatus AMAM011118 I 0.000
AFUN000238 Anopheles funestus AFUN000238 I 0.000
LCUP015975 Lucilia cuprina LCUP015975 I 0.000
LCUP006106 Lucilia cuprina LCUP006106 I 0.000
HHAL000577-PA Halyomorpha halys HHAL000577-PA I 0.000
CLEC009854 Cimex lectularius CLEC009854 I 0.000
CLEC007879 Cimex lectularius CLEC007879 I 0.000
Sakowv30043910m.g Saccoglossus kowalevskii Sakowv30043910m.g I 0.000
Sakowv30020657m.g Saccoglossus kowalevskii Sakowv30020657m.g I 0.000
e_gw.549.21.1 Branchiostoma floridae e_gw.549.21.1 I 0.000
Hsal_15570--XP_393635.1_APIME Harpegnathos saltator Hsal_15570--XP_393635.1_APIME I 0.000
LDEC020561 Leptinotarsa decemlineata LDEC020561 I 0.000
Minc03173 Meloidogyne incognita Minc03173 I 0.000
AFAF006008 Anopheles farauti AFAF006008 I 0.000
AEPI009754 Anopheles epiroticus AEPI009754 I 0.000
ADIR008499 Anopheles dirus ADIR008499 I 0.000
ACUA028387 Anopheles culicifacies ACUA028387 I 0.000
ACUA020936 Anopheles culicifacies ACUA020936 I 0.000
ACOM034313 Anopheles coluzzii ACOM034313 I 0.000
AATE009495 Anopheles atroparvus AATE009495 I 0.000
AARA006634 Anopheles arabiensis AARA006634 I 0.000
AALB009693 Anopheles albimanus AALB009693 I 0.000
Cflo_05070--XP_393635.1_APIME Camponotus floridanus Cflo_05070--XP_393635.1_APIME I 0.000
BTMF_0000584401 Brugia timori BTMF_0000584401 I 0.000
TsM_000296500 Taenia solium TsM_000296500 I 0.000
SCUD_0000812901 Schistosoma curassoni SCUD_0000812901 I 0.000
PXEA_0002510601 Protopolystoma xenopodis PXEA_0002510601 I 0.000
PXEA_0001895501 Protopolystoma xenopodis PXEA_0001895501 I 0.000
PXEA_0001255201 Protopolystoma xenopodis PXEA_0001255201 I 0.000
PEQ_0001172001 Parascaris equorum PEQ_0001172001 I 0.000
PEQ_0000367601 Parascaris equorum PEQ_0000367601 I 0.000
OFLC_0001568801 Onchocerca flexuosa OFLC_0001568801 I 0.000
OFLC_0000069201 Onchocerca flexuosa OFLC_0000069201 I 0.000
SCUD_0001719701 Schistosoma curassoni SCUD_0001719701 I 0.000
SMTD_0002280601 Schistosoma mattheei SMTD_0002280601 I 0.000
SROB_0000014301 Schistosoma rodhaini SROB_0000014301 I 0.000
TRE_0000860801 Trichobilharzia regenti TRE_0000860801 I 0.000
TELCIR_07155 Teladorsagia circumcincta TELCIR_07155 I 0.000
TCNE_0001765901 Toxocara canis TCNE_0001765901 I 0.000
TCLT_0000599001 Thelazia callipaeda TCLT_0000599001 I 0.000
TCLT_0000305201 Thelazia callipaeda TCLT_0000305201 I 0.000
TASK_0000431401 Taenia asiatica TASK_0000431401 I 0.000
T265_01068 Opisthorchis viverrini T265_01068 I 0.000
SROB_0001108301 Schistosoma rodhaini SROB_0001108301 I 0.000
nRc.2.0.1.g34717 Romanomermis culicivorax nRc.2.0.1.g34717 I 0.000
nOo.2.0.1.g01207 Onchocerca ochengi nOo.2.0.1.g01207 I 0.000
nOo.2.0.1.g00955 Onchocerca ochengi nOo.2.0.1.g00955 I 0.000
EVEC_0000662001 Enterobius vermicularis EVEC_0000662001 I 0.000
EEL_0000392901 Elaeophora elaphi EEL_0000392901 I 0.000
DME_0001008101 Dracunculus medinensis DME_0001008101 I 0.000
DME_0000365001 Dracunculus medinensis DME_0000365001 I 0.000
DILT_0000923301 Diphyllobothrium latum DILT_0000923301 I 0.000
DILT_0000634101 Diphyllobothrium latum DILT_0000634101 I 0.000
CGOC_0000550601 Cylicostephanus goldi CGOC_0000550601 I 0.000
C_01032 Schistosoma haematobium C_01032 I 0.000
EVEC_0001353201 Enterobius vermicularis EVEC_0001353201 I 0.000
GPUH_0000001901 Gongylonema pulchrum GPUH_0000001901 I 0.000
GPUH_0002067401 Gongylonema pulchrum GPUH_0002067401 I 0.000
nLs.2.1.2.g00296 Litomosoides sigmodontis nLs.2.1.2.g00296 I 0.000
NECAME_15973 Necator americanus NECAME_15973 I 0.000
NBR_0000568501 Nippostrongylus brasiliensis NBR_0000568501 I 0.000
nAv.1.0.1.g03166 Acanthocheilonema viteae nAv.1.0.1.g03166 I 0.000
maker-nMf.1.1.scaf04426-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf04426-augustus-gene-0.4 I 0.000
maker-nMf.1.1.scaf00145-augustus-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf00145-augustus-gene-0.13 I 0.000
L893_g26530 Steinernema glaseri L893_g26530 I 0.000
Hba_17613 Heterorhabditis bacteriophora Hba_17613 I 0.000
C_01031 Schistosoma haematobium C_01031 I 0.000
Alligator_sinensis_CCG007467.1 Alligator sinensis Alligator_sinensis_CCG007467.1 I 0.000
GI24758 Drosophila mojavensis FBgn0147480 I 0.000
HOXC4 Procavia capensis ENSPCAG00000011039 I 0.000
ENSPANG00000025837 Papio anubis ENSPANG00000025837 I 0.000
ENSORLG00000012370 Oryzias latipes ENSORLG00000012370 I 0.000
ENSOARG00000018096 Ovis aries ENSOARG00000018096 I 0.000
ENSMPUG00000006459 Mustela putorius furo ENSMPUG00000006459 I 0.000
BARHL2 Monodelphis domestica ENSMODG00000012056 I 0.000
ENSMGAG00000015339 Meleagris gallopavo ENSMGAG00000015339 I 0.000
ENSMGAG00000006701 Meleagris gallopavo ENSMGAG00000006701 I 0.000
ENSGMOG00000015411 Gadus morhua ENSGMOG00000015411 I 0.000
ENSPFOG00000017586 Poecilia formosa ENSPFOG00000017586 I 0.000
ENSPFOG00000024523 Poecilia formosa ENSPFOG00000024523 I 0.000
GH18559 Drosophila grimshawi FBgn0126026 I 0.000
GG22770 Drosophila erecta FBgn0114935 I 0.000
GF23072 Drosophila ananassae FBgn0100066 I 0.000
GA16115 Drosophila pseudoobscura FBgn0076131 I 0.000
BARHL2 Vicugna pacos ENSVPAG00000005913 I 0.000
ENSTSYG00000012674 Tarsius syrichta ENSTSYG00000012674 I 0.000
OTP Pteropus vampyrus ENSPVAG00000011630 I 0.000
NKX1-1 Pan troglodytes ENSPTRG00000041220 I 0.000
ENSPSIG00000005438 Pelodiscus sinensis ENSPSIG00000005438 I 0.000
ENSGMOG00000006424 Gadus morhua ENSGMOG00000006424 I 0.000
ENSGGOG00000027271 Gorilla gorilla ENSGGOG00000027271 I 0.000
CGI_10009942 Crassostrea gigas CGI_10009942 I 0.000
CapteG80769 Capitella teleta CapteG80769 I 0.000
CapteG30874 Capitella teleta CapteG30874 I 0.000
BGIBMGA007802 Bombyx mori BGIBMGA007802 I 0.000
Aqu1.218592 Amphimedon queenslandica Aqu1.218592 I 0.000
AGAP003574 Anopheles gambiae AGAP003574 I 0.000
ACYPI34506 Acyrthosiphon pisum ACYPI34506 I 0.000
WUBG_02861 Wuchereria bancrofti WUBG_02861 I 0.000
WUBG_01783 Wuchereria bancrofti WUBG_01783 I 0.000
CGI_10015407 Crassostrea gigas CGI_10015407 I 0.000
CPIJ010424 Culex quinquefasciatus CPIJ010424 I 0.000
ALX1 Gorilla gorilla ENSGGOG00000000168 I 0.000
ENSGACG00000020715 Gasterosteus aculeatus ENSGACG00000020715 I 0.000
BARHL1 Felis catus ENSFCAG00000007105 I 0.000
TLX3 Dasypus novemcinctus ENSDNOG00000011151 I 0.000
PDX1 Dasypus novemcinctus ENSDNOG00000003213 I 0.000
MEOX1 Bos taurus ENSBTAG00000015751 I 0.000
ENSAPLG00000003977 Anas platyrhynchos ENSAPLG00000003977 I 0.000
DAPPUDRAFT_55144 Daphnia pulex DAPPUDRAFT_55144 I 0.000
DAPPUDRAFT_347554 Daphnia pulex DAPPUDRAFT_347554 I 0.000
CpipJ_CPIJ010424 Culex pipiens CpipJ_CPIJ010424 I 0.000
GL12006 Drosophila persimilis FBgn0149614 I 0.000
Afo_R001648 Aptenodytes forsteri Afo_R001648 I 0.000
NEMVEDRAFT_v1g93991 Nematostella vectensis NEMVEDRAFT_v1g93991 I 0.000
NV16195 Nasonia vitripennis NV16195 I 0.000
PHUM165720 Pediculus humanus PHUM165720 I 0.000
RPRC005801 Rhodnius prolixus RPRC005801 I 0.000
SINV18014 Solenopsis invicta SINV18014 I 0.000
SINV21122 Solenopsis invicta SINV21122 I 0.000
SMAR006755 Strigamia maritima SMAR006755 I 0.000
Smp_125600 Schistosoma mansoni Smp_125600 I 0.000
Smp_165410 Schistosoma mansoni Smp_165410 I 0.000
Smp_189380 Schistosoma mansoni Smp_189380 I 0.000
TC013309 Tribolium castaneum TC013309 I 0.000
tetur14g02380 Tetranychus urticae tetur14g02380 I 0.000
TriadG9432 Trichoplax adhaerens TriadG9432 I 0.000
WBGene00242173 Onchocerca volvulus WBGene00242173 I 0.000
WBGene00245266 Onchocerca volvulus WBGene00245266 I 0.000
YQE_05070 Dendroctonus ponderosae YQE_05070 I 0.000
Aan_R000875 Calypte anna Aan_R000875 I 0.000
NEMVEDRAFT_v1g49015 Nematostella vectensis NEMVEDRAFT_v1g49015 I 0.000
NEMVEDRAFT_v1g48953 Nematostella vectensis NEMVEDRAFT_v1g48953 I 0.000
MESCA011262 Megaselia scalaris MESCA011262 I 0.000
L798_01064 Zootermopsis nevadensis L798_01064 I 0.000
KGM_12590 Danaus plexippus KGM_12590 I 0.000
KGM_02204 Danaus plexippus KGM_02204 I 0.000
ISCW024267 Ixodes scapularis ISCW024267 I 0.000
GB54432 Apis mellifera GB54432 I 0.000
GE25524 Drosophila yakuba FBgn0242590 I 0.000
GK22387 Drosophila willistoni FBgn0224366 I 0.000
GJ22545 Drosophila virilis FBgn0209652 I 0.000
GD19218 Drosophila simulans FBgn0190723 I 0.000
LOAG_02387 Loa loa LOAG_02387 I 0.000
GM15291 Drosophila sechellia FBgn0170211 I 0.000
LotgiG120200 Lottia gigantea LotgiG120200 I 0.000
MCINX000309 Melitaea cinxia MCINX000309 I 0.000
MESCA003890 Megaselia scalaris MESCA003890 I 0.000
CLEC000966 Cimex lectularius CLEC000966 N 0.000
AMEC003288 Anopheles melas AMEC003288 N 0.000
WUBG_03794 Wuchereria bancrofti WUBG_03794 N 0.000
ENSGMOG00000011340 Gadus morhua ENSGMOG00000011340 N 0.000
Cmyd_10002827 Chelonia mydas Cmyd_10002827 N 0.000
BGIBMGA010035 Bombyx mori BGIBMGA010035 N 0.000
FOMPIDRAFT_1062989 Fomitopsis pinicola FOMPIDRAFT_1062989 N 0.000
CapteG71005 Capitella teleta CapteG71005 N 0.000
ACHR010176 Anopheles christyi ACHR010176 N 0.000
LCUP002254 Lucilia cuprina LCUP002254 N 0.000
SCLCIDRAFT_964190 Scleroderma citrinum SCLCIDRAFT_964190 N 0.000
LOAG_17577 Loa loa LOAG_17577 N 0.000
ASIS018158 Anopheles sinensis ASIS018158 N 0.000
PEQ_0000006101 Parascaris equorum PEQ_0000006101 N 0.000
PEQ_0000070601 Parascaris equorum PEQ_0000070601 N 0.000