OBART08G00930 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART08G00930 T254996_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MADS26
M10974_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
1.000 1.000
AGL12
M10906_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.766 0.766
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.723 0.723
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.723 0.723
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.723 0.723
FBP24_PETHY
M10997_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.702 0.702
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART08G00930.1 MADS box 10 56

Links

Other MADS box family TFs
Other Oryza barthii TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OLONG_011815 Oryza longistaminata OLONG_011815 I 1.000
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 1.000
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 1.000
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 1.000
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 1.000
MADS26 Oryza sativa OS08G0112700 D 1.000
BGIOSGA027872 Oryza indica BGIOSGA027872 I 1.000
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.957
OB08G11080 Oryza brachyantha OB08G11080 I 0.957
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.957
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.957
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.957
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.957
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.957
F775_26271 Aegilops tauschii F775_26271 I 0.957
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.957
Si014419m.g Setaria italica Si014419m.g I 0.936
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.936
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.936
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.936
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.936
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.915
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.894
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.875
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.872
PK26896.1 Cannabis sativa PK26896.1 I 0.872
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.867
TCM_036568 Theobroma cacao TCM_036568 I 0.854
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.854
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.854
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.851
29907.m000663 Ricinus communis 29907.m000663 I 0.851
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.842
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.833
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.833
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.833
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.833
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.833
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.833
Ca_19954 Cicer arietinum Ca_19954 I 0.833
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.833
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.833
Cla012709 Citrullus lanatus Cla012709 I 0.833
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.833
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.833
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.833
mgf017448m Mimulus guttatus mgf017448m I 0.833
Pm004239 Prunus mume Pm004239 I 0.830
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.830
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.830
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.812
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.812
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.812
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.812
Si012632m.g Setaria italica Si012632m.g I 0.809
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.809
OB04G21020 Oryza brachyantha OB04G21020 I 0.809
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.809
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.809
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.809
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.792
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.792
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.792
OBART04G13800 Oryza barthii OBART04G13800 I 0.792
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.792
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.792
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.792
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.792
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.792
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.792
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.792
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.787
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.787
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.787
MDP0000316609 Malus domestica MDP0000316609 I 0.787
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.787
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.787
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.771
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.771
MDP0000192806 Malus domestica MDP0000192806 I 0.771
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.771
F775_05799 Aegilops tauschii F775_05799 I 0.771
MDP0000193953 Malus domestica MDP0000193953 I 0.771
OBART04G13770 Oryza barthii OBART04G13770 I 0.771
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.771
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.771
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.766
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.766
AGL12 Arabidopsis thaliana AT1G71692 D 0.766
Bra007972 Brassica rapa Bra007972 I 0.766
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.766
Si024640m.g Setaria italica Si024640m.g I 0.766
Bo6g113110 Brassica oleracea Bo6g113110 I 0.766
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.766
Bo2g073010 Brassica oleracea Bo2g073010 I 0.766
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.766
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.750
Bra016128 Brassica rapa Bra016128 I 0.750
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.745
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.745
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.745
Bo6g094120 Brassica oleracea Bo6g094120 I 0.745
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.745
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.745
Bra003919 Brassica rapa Bra003919 I 0.745
PK27158.1 Cannabis sativa PK27158.1 I 0.743
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.729
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.729
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.729
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
evm.TU.supercontig_660.1 Carica papaya evm.TU.supercontig_660.1 I 0.723
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.723
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.708
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.708
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.708
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.708
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.708
TCM_007324 Theobroma cacao TCM_007324 I 0.708
Traes_1BL_B44C0D37C Triticum aestivum Traes_1BL_B44C0D37C I 0.708
Traes_1DL_6DA0DFC5B Triticum aestivum Traes_1DL_6DA0DFC5B I 0.708
TRIUR3_24724 Triticum urartu TRIUR3_24724 I 0.708
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.708
Traes_1AL_5F5A87122 Triticum aestivum Traes_1AL_5F5A87122 I 0.708
Solyc05g012020.2 Solanum lycopersicum Solyc05g012020.2 D 0.708
MLOC_65843 Hordeum vulgare MLOC_65843 I 0.708
PGSC0003DMG400001938 Solanum tuberosum PGSC0003DMG400001938 I 0.708
GSMUA_Achr2G11820_001 Musa acuminata GSMUA_Achr2G11820_001 I 0.708
Solyc04g005320.2 Solanum lycopersicum Solyc04g005320.2 I 0.708
GSMUA_Achr5G10250_001 Musa acuminata GSMUA_Achr5G10250_001 I 0.708
F775_07497 Aegilops tauschii F775_07497 I 0.708
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.708
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
evm.TU.supercontig_3.196 Carica papaya evm.TU.supercontig_3.196 I 0.708
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.708
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.708
29804.m001536 Ricinus communis 29804.m001536 I 0.708
Ca_14956 Cicer arietinum Ca_14956 I 0.708
ANR1 Arabidopsis thaliana AT2G14210 I 0.708
BRADI4G06867 Brachypodium distachyon BRADI4G06867 I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.702
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.702
Pm007034 Prunus mume Pm007034 I 0.702
mgf021543m Mimulus guttatus mgf021543m I 0.702
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.702
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.702
PRUPE_ppa010679mg Prunus persica PRUPE_ppa010679mg I 0.702
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.702
PK26778.1 Cannabis sativa PK26778.1 I 0.700