CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM04G13520
(
Oryza glumaepatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
OGLUM04G13520
T255047_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.812
0.812
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.771
0.771
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729
0.729
MLOC_61901
M10964_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.708
0.708
Q40882_PETHY
M11003_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP11_01
0.708
0.708
Q9FR84_MAIZE
M10981_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.708
0.708
Q41829_MAIZE
M10977_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM04G13520.1
MADS box
10
57
RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVLSPHGKIYEL
Links
Other
MADS box
family TFs
Other
Oryza glumaepatula
TFs
209 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART04G13800
Oryza barthii
OBART04G13800
I
0.979
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.979
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.979
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.979
OB04G21020
Oryza brachyantha
OB04G21020
I
0.979
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.979
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.979
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.979
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.979
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.979
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.974
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.967
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.958
OBART04G13770
Oryza barthii
OBART04G13770
I
0.958
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.957
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.957
Si012632m.g
Setaria italica
Si012632m.g
I
0.957
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.938
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.938
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.938
F775_05799
Aegilops tauschii
F775_05799
I
0.938
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.938
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.936
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.933
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.915
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.896
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.875
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.872
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.872
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.872
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.854
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.854
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.854
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.851
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.833
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.833
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.833
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.833
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.833
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.833
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.833
mgf017448m
Mimulus guttatus
mgf017448m
I
0.833
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.833
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.833
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.833
Cla012709
Citrullus lanatus
Cla012709
I
0.833
Bra016128
Brassica rapa
Bra016128
I
0.833
TCM_036568
Theobroma cacao
TCM_036568
I
0.833
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.833
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.833
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.833
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.833
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.833
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.833
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.833
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.833
Ca_19954
Cicer arietinum
Ca_19954
I
0.833
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.830
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.830
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.830
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.830
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.830
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.830
MDP0000316609
Malus domestica
MDP0000316609
I
0.830
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.830
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.830
F775_26271
Aegilops tauschii
F775_26271
I
0.830
OB08G11080
Oryza brachyantha
OB08G11080
I
0.830
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.830
MDP0000193953
Malus domestica
MDP0000193953
I
0.812
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.812
MDP0000192806
Malus domestica
MDP0000192806
I
0.812
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.812
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.812
AGL12
Arabidopsis thaliana
AT1G71692
D
0.812
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.812
Bra007972
Brassica rapa
Bra007972
I
0.812
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.812
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.812
Bra003919
Brassica rapa
Bra003919
I
0.809
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.809
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.809
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.809
PK26896.1
Cannabis sativa
PK26896.1
I
0.809
29907.m000663
Ricinus communis
29907.m000663
I
0.809
Pm004239
Prunus mume
Pm004239
I
0.809
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.792
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.792
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.792
Si014419m.g
Setaria italica
Si014419m.g
I
0.792
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.792
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.788
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.787
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.787
MADS26
Oryza sativa
OS08G0112700
D
0.771
OLONG_011815
Oryza longistaminata
OLONG_011815
I
0.771
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
0.771
OBART08G00930
Oryza barthii
OBART08G00930
I
0.771
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
0.771
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
0.771
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
0.771
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
0.771
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.750
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.750
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.745
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.745
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.743
Sb01g030570
Sorghum bicolor
Sb01g030570
I
0.729
cassava3099.m1
Manihot esculenta
cassava3099.m1
I
0.729
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.729
SapurV1A.0024s0570
Salix purpurea
SapurV1A.0024s0570
I
0.729
Aquca_013_00471
Aquilegia coerulea
Aquca_013_00471
I
0.729
Pm024524
Prunus mume
Pm024524
I
0.729
Si038299m.g
Setaria italica
Si038299m.g
I
0.729
GSMUA_Achr2G04340_001
Musa acuminata
GSMUA_Achr2G04340_001
I
0.729
ORGLA03G0015400
Oryza glaberrima
ORGLA03G0015400
I
0.729
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.729
OPUNC03G01630
Oryza punctata
OPUNC03G01630
I
0.729
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.729
ORUFI03G01510
Oryza rufipogon
ORUFI03G01510
I
0.729
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.729
PRUPE_ppa019906mg
Prunus persica
PRUPE_ppa019906mg
I
0.729
OB03G11760
Oryza brachyantha
OB03G11760
I
0.729
ONIVA03G01420
Oryza nivara
ONIVA03G01420
I
0.729
OLONG_010918
Oryza longistaminata
OLONG_010918
I
0.729
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.729
OBART04G25610
Oryza barthii
OBART04G25610
I
0.729
OMERI03G01730
Oryza meridionalis
OMERI03G01730
I
0.729
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.729
OBART03G01800
Oryza barthii
OBART03G01800
I
0.729
MADS50
Oryza sativa
OS03G0122600
D
0.729
LPERR03G01640
Leersia perrieri
LPERR03G01640
I
0.729
OGLUM03G01750
Oryza glumaepatula
OGLUM03G01750
I
0.729
GSMUA_Achr5G20280_001
Musa acuminata
GSMUA_Achr5G20280_001
I
0.729
MADS31
Oryza sativa
OS04G0614100
I
0.729
Pavir.J22336
Panicum virgatum
Pavir.J22336
I
0.729
GSMUA_Achr11G21460_001
Musa acuminata
GSMUA_Achr11G21460_001
I
0.729
POPTR_0002s15310
Populus trichocarpa
POPTR_0002s15310
I
0.729
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.723
Si024640m.g
Setaria italica
Si024640m.g
I
0.723
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.708
Lus10002763.g
Linum usitatissimum
Lus10002763.g
I
0.708
Pavir.Ba03990
Panicum virgatum
Pavir.Ba03990
I
0.708
Pavir.Bb00065
Panicum virgatum
Pavir.Bb00065
I
0.708
SapurV1A.0578s0130
Salix purpurea
SapurV1A.0578s0130
I
0.708
evm.TU.supercontig_3.196
Carica papaya
evm.TU.supercontig_3.196
I
0.708
Aquca_035_00266
Aquilegia coerulea
Aquca_035_00266
I
0.708
Thhalv10027162m.g
Eutrema salsugineum
Thhalv10027162m.g
I
0.708
PK19764.1
Cannabis sativa
PK19764.1
I
0.708
MDP0000144597
Malus domestica
MDP0000144597
I
0.708
Pavir.Ia04538
Panicum virgatum
Pavir.Ia04538
I
0.708
Ciclev10016427m.g
Citrus clementina
Ciclev10016427m.g
I
0.708
Pavir.J10823
Panicum virgatum
Pavir.J10823
I
0.708
MDP0000144516
Malus domestica
MDP0000144516
I
0.708
MDP0000135652
Malus domestica
MDP0000135652
I
0.708
PGSC0003DMG400000008
Solanum tuberosum
PGSC0003DMG400000008
I
0.708
LPERR07G18670
Leersia perrieri
LPERR07G18670
I
0.708
LPERR10G12950
Leersia perrieri
LPERR10G12950
I
0.708
LPERR07G00480
Leersia perrieri
LPERR07G00480
I
0.708
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.708
GSMUA_Achr7G23690_001
Musa acuminata
GSMUA_Achr7G23690_001
I
0.708
MLOC_61901
Hordeum vulgare
MLOC_61901
D
0.708
OB10G24040
Oryza brachyantha
OB10G24040
I
0.708
OLONG_021245
Oryza longistaminata
OLONG_021245
I
0.708
OLONG_017665
Oryza longistaminata
OLONG_017665
I
0.708
OGLUM10G16960
Oryza glumaepatula
OGLUM10G16960
I
0.708
OBART10G16960
Oryza barthii
OBART10G16960
I
0.708
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.708
GSMUA_Achr11G19540_001
Musa acuminata
GSMUA_Achr11G19540_001
I
0.708
GLYMA08G06991
Glycine max
GLYMA08G06991
I
0.708
GRMZM2G026223
Zea mays
GRMZM2G026223
I
0.708
F775_52406
Aegilops tauschii
F775_52406
I
0.708
BRADI2G25090
Brachypodium distachyon
BRADI2G25090
I
0.708
MADS56
Oryza indica
BGIOSGA033356
I
0.708
GRMZM2G070034
Zea mays
GRMZM2G070034
I
0.708
GRMZM2G072582
Zea mays
GRMZM2G072582
I
0.708
GSMUA_Achr10G21480_001
Musa acuminata
GSMUA_Achr10G21480_001
I
0.708
GSMUA_Achr10G10990_001
Musa acuminata
GSMUA_Achr10G10990_001
I
0.708
GRMZM2G171365
Zea mays
GRMZM2G171365
I
0.708
GRMZM2G148693
Zea mays
GRMZM2G148693
I
0.708
OMERI10G13430
Oryza meridionalis
OMERI10G13430
I
0.708
ONIVA10G18680
Oryza nivara
ONIVA10G18680
I
0.708
Solyc11g028020.1
Solanum lycopersicum
Solyc11g028020.1
I
0.708
Traes_2AL_20C2D79E1
Triticum aestivum
Traes_2AL_20C2D79E1
I
0.708
Solyc08g080100.2
Solanum lycopersicum
Solyc08g080100.2
I
0.708
Si038257m.g
Setaria italica
Si038257m.g
I
0.708
Si030802m.g
Setaria italica
Si030802m.g
I
0.708
Traes_2BL_26F24E716
Triticum aestivum
Traes_2BL_26F24E716
I
0.708
Traes_2DL_903A29CBA
Triticum aestivum
Traes_2DL_903A29CBA
I
0.708
Q40882_PETHY
Petunia x hybrida
Q40882_PETHY
D
0.708
Ca_16423
Cicer arietinum
Ca_16423
I
0.708
AGL18
Vitis vinifera
VIT_08s0007g08790
I
0.708
TRIUR3_21876
Triticum urartu
TRIUR3_21876
I
0.708
cassava38700.m1
Manihot esculenta
cassava38700.m1
I
0.708
Sb08g006430
Sorghum bicolor
Sb08g006430
I
0.708
MADS56
Oryza sativa
OS10G0536100
I
0.708
ORUFI10G17990
Oryza rufipogon
ORUFI10G17990
I
0.708
ORGLA12G0056500
Oryza glaberrima
ORGLA12G0056500
I
0.708
ORGLA10G0119200
Oryza glaberrima
ORGLA10G0119200
I
0.708
PGSC0003DMG400022748
Solanum tuberosum
PGSC0003DMG400022748
I
0.708
PGSC0003DMG400025525
Solanum tuberosum
PGSC0003DMG400025525
I
0.708
Q41829_MAIZE
Zea mays
Q41829_MAIZE
D
0.708
Q9FR84_MAIZE
Zea mays
Q9FR84_MAIZE
D
0.708
POPTR_0014s07020
Populus trichocarpa
POPTR_0014s07020
I
0.708
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.708
Sb02g001090
Sorghum bicolor
Sb02g001090
I
0.708
Traes_5BS_A19FD8E34
Triticum aestivum
Traes_5BS_A19FD8E34
I
0.705