OMERI05G05890 (Oryza meridionalis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OMERI05G05890 T255182_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.739 0.739
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.739 0.739
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.739 0.739
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.739 0.739
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.739 0.739
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.739 0.739
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.739 0.739
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.739 0.739
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.739 0.739
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.717 0.717
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.717 0.717
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI05G05890.1 MADS box 40 85

Links

Other MADS box family TFs
Other Oryza meridionalis TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo02907s010 Brassica oleracea Bo02907s010 I 0.759
PK27158.1 Cannabis sativa PK27158.1 I 0.743
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.739
Pavir.Cb01898 Panicum virgatum Pavir.Cb01898 I 0.729
OGLUM12G07150 Oryza glumaepatula OGLUM12G07150 I 0.729
Pavir.Ea01147 Panicum virgatum Pavir.Ea01147 I 0.729
F775_30822 Aegilops tauschii F775_30822 I 0.729
MADS13 Oryza sativa OS12G0207000 I 0.729
OMERI12G04040 Oryza meridionalis OMERI12G04040 I 0.729
GRMZM2G160687 Zea mays GRMZM2G160687 I 0.729
MLOC_57890 Hordeum vulgare MLOC_57890 I 0.729
ONIVA12G05640 Oryza nivara ONIVA12G05640 I 0.729
ORUFI12G06810 Oryza rufipogon ORUFI12G06810 I 0.729
LPERR12G05240 Leersia perrieri LPERR12G05240 I 0.729
Traes_5AS_7BFB385EF Triticum aestivum Traes_5AS_7BFB385EF I 0.729
Sb08g006460 Sorghum bicolor Sb08g006460 I 0.729
BRADI4G40350 Brachypodium distachyon BRADI4G40350 I 0.729
OBART12G05940 Oryza barthii OBART12G05940 I 0.729
OLONG_006914 Oryza longistaminata OLONG_006914 I 0.729
Si022981m.g Setaria italica Si022981m.g I 0.729
Traes_5DS_16243E52C Triticum aestivum Traes_5DS_16243E52C I 0.729
OB12G15620 Oryza brachyantha OB12G15620 I 0.729
TRIUR3_28215 Triticum urartu TRIUR3_28215 I 0.729
OPUNC12G05660 Oryza punctata OPUNC12G05660 I 0.729
AMTR_s00071p00193200 Amborella trichopoda AMTR_s00071p00193200 I 0.717
STK Vitis vinifera VIT_18s0041g01880 I 0.717
Cucsa.061700 Cucumis sativus Cucsa.061700 I 0.708
Cucsa.047280 Cucumis sativus Cucsa.047280 I 0.708
Cucsa.212720 Cucumis sativus Cucsa.212720 I 0.708
mgf000475m Mimulus guttatus mgf000475m I 0.708
AG_TOBAC Nicotiana tabacum AG_TOBAC D 0.708
Ca_00445 Cicer arietinum Ca_00445 I 0.708
Cla009886 Citrullus lanatus Cla009886 I 0.708
VIT_12s0142g00360 Vitis vinifera VIT_12s0142g00360 I 0.708
AG Vitis vinifera VIT_10s0003g02070 I 0.708
TRIUR3_34584 Triticum urartu TRIUR3_34584 I 0.708
Pm004218 Prunus mume Pm004218 I 0.708
AG_PETHY Petunia x hybrida AG_PETHY D 0.708
cassava21103.m1 Manihot esculenta cassava21103.m1 I 0.708
cassava21102.m1 Manihot esculenta cassava21102.m1 I 0.708
cassava10048.m1 Manihot esculenta cassava10048.m1 I 0.708
Q08711_PETHY Petunia x hybrida Q08711_PETHY D 0.708
cassava23035.valid.m1 Manihot esculenta cassava23035.valid.m1 I 0.708
Cagra.9536s0004 Capsella grandiflora Cagra.9536s0004 I 0.708
SapurV1A.0157s0170 Salix purpurea SapurV1A.0157s0170 I 0.708
SapurV1A.0945s0100 Salix purpurea SapurV1A.0945s0100 I 0.708
Pavir.J04815 Panicum virgatum Pavir.J04815 I 0.708
Pavir.Eb00241 Panicum virgatum Pavir.Eb00241 I 0.708
Pavir.Ca00579 Panicum virgatum Pavir.Ca00579 I 0.708
Pavir.Ea00226 Panicum virgatum Pavir.Ea00226 I 0.708
Thhalv10026704m.g Eutrema salsugineum Thhalv10026704m.g I 0.708
Thhalv10028938m.g Eutrema salsugineum Thhalv10028938m.g I 0.708
chr6.CM0118.440.nd Lotus japonicus chr6.CM0118.440.nd I 0.708
chr6.CM0836.320.nc Lotus japonicus chr6.CM0836.320.nc I 0.708
chr3.CM0129.40.nc Lotus japonicus chr3.CM0129.40.nc I 0.708
PK24532.1 Cannabis sativa PK24532.1 I 0.708
PK15717.1 Cannabis sativa PK15717.1 I 0.708
orange1.1g038783m.g Citrus sinensis orange1.1g038783m.g I 0.708
Gorai.N017200 Gossypium raimondii Gorai.N017200 I 0.708
Cagra.4960s0003 Capsella grandiflora Cagra.4960s0003 I 0.708
Carubv10003771m.g Capsella rubella Carubv10003771m.g I 0.708
Bostr.30275s0374 Boechera stricta Bostr.30275s0374 I 0.708
Bostr.25463s0328 Boechera stricta Bostr.25463s0328 I 0.708
mgf012166m Mimulus guttatus mgf012166m I 0.708
Carubv10005558m.g Capsella rubella Carubv10005558m.g I 0.708
Ciclev10033176m.g Citrus clementina Ciclev10033176m.g I 0.708
Gorai.009G265100 Gossypium raimondii Gorai.009G265100 I 0.708
Gorai.012G042600 Gossypium raimondii Gorai.012G042600 I 0.708
evm.TU.supercontig_50.73 Carica papaya evm.TU.supercontig_50.73 I 0.708
Eucgr.K01195 Eucalyptus grandis Eucgr.K01195 I 0.708
Eucgr.F02981 Eucalyptus grandis Eucgr.F02981 I 0.708
mgf003296m Mimulus guttatus mgf003296m I 0.708
Sb09g006360 Sorghum bicolor Sb09g006360 I 0.708
GLYMA15G09500 Glycine max GLYMA15G09500 I 0.708
GRMZM2G010669 Zea mays GRMZM2G010669 I 0.708
GLYMA13G29510 Glycine max GLYMA13G29510 I 0.708
GLYMA08G12730 Glycine max GLYMA08G12730 I 0.708
GLYMA06G48270 Glycine max GLYMA06G48270 I 0.708
GRMZM2G052890 Zea mays GRMZM2G052890 I 0.708
GSMUA_Achr5G16870_001 Musa acuminata GSMUA_Achr5G16870_001 I 0.708
MADS3_ORYSJ Oryza sativa MADS3_ORYSJ D 0.708
MTR_2g017865 Medicago truncatula MTR_2g017865 I 0.708
LPERR05G05550 Leersia perrieri LPERR05G05550 I 0.708
LPERR01G06160 Leersia perrieri LPERR01G06160 I 0.708
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.708
GLYMA05G29595 Glycine max GLYMA05G29595 I 0.708
STK Arabidopsis lyrata fgenesh2_kg.6__2975__AT4G09960.3 I 0.708
BGIOSGA018624 Oryza indica BGIOSGA018624 I 0.708
Bo00962s030 Brassica oleracea Bo00962s030 I 0.708
BGIOSGA002178 Oryza indica BGIOSGA002178 I 0.708
AG Arabidopsis thaliana AT4G18960 D 0.708
STK Arabidopsis thaliana AT4G09960 I 0.708
Bo1g020110 Brassica oleracea Bo1g020110 I 0.708
Bo3g157470 Brassica oleracea Bo3g157470 I 0.708
F775_27566 Aegilops tauschii F775_27566 I 0.708
BRADI2G32910 Brachypodium distachyon BRADI2G32910 I 0.708
Bra037895 Brassica rapa Bra037895 I 0.708
Bra013364 Brassica rapa Bra013364 I 0.708
OB01G16550 Oryza brachyantha OB01G16550 I 0.708
MTR_3g005530 Medicago truncatula MTR_3g005530 I 0.708
AMTR_s00021p00254030 Amborella trichopoda AMTR_s00021p00254030 I 0.708
AG Arabidopsis lyrata scaffold_702516.1 I 0.708
Sb03g002525 Sorghum bicolor Sb03g002525 I 0.708
PRUPE_ppa011140mg Prunus persica PRUPE_ppa011140mg I 0.708
POPTR_0011s03150 Populus trichocarpa POPTR_0011s03150 I 0.708
Si023516m.g Setaria italica Si023516m.g I 0.708
TCM_001841 Theobroma cacao TCM_001841 I 0.708
Traes_3DS_51A589227 Triticum aestivum Traes_3DS_51A589227 I 0.708
Traes_3AS_55E9080C2 Triticum aestivum Traes_3AS_55E9080C2 I 0.708
TCM_036541 Theobroma cacao TCM_036541 I 0.708
TCM_029596 Theobroma cacao TCM_029596 I 0.708
ORUFI05G07090 Oryza rufipogon ORUFI05G07090 I 0.708
OS01G0201700 Oryza sativa OS01G0201700 I 0.708
OGLUM05G06890 Oryza glumaepatula OGLUM05G06890 I 0.708
OLONG_001300 Oryza longistaminata OLONG_001300 I 0.708
OGLUM01G07510 Oryza glumaepatula OGLUM01G07510 I 0.708
OBART01G06520 Oryza barthii OBART01G06520 I 0.708
OB05G16140 Oryza brachyantha OB05G16140 I 0.708
ONIVA01G08650 Oryza nivara ONIVA01G08650 I 0.708
OMERI01G06630 Oryza meridionalis OMERI01G06630 I 0.708
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.708
ORUFI01G07080 Oryza rufipogon ORUFI01G07080 I 0.708
ORGLA01G0061900 Oryza glaberrima ORGLA01G0061900 I 0.708
OPUNC05G06200 Oryza punctata OPUNC05G06200 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
PK10580.1 Cannabis sativa PK10580.1 I 0.704
Bra017376 Brassica rapa Bra017376 I 0.700
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.700