CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OPUNC06G24880
(
Oryza punctata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
OPUNC06G24880
T255331_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.935
0.935
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.761
0.761
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.739
0.739
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.739
0.739
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OPUNC06G24880.1
MADS box
10
55
RIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGNIK
Links
Other
MADS box
family TFs
Other
Oryza punctata
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OMERI06G27290
Oryza meridionalis
OMERI06G27290
I
0.935
ONIVA06G29820
Oryza nivara
ONIVA06G29820
I
0.935
ORGLA06G0229200
Oryza glaberrima
ORGLA06G0229200
I
0.935
GRMZM2G139073
Zea mays
GRMZM2G139073
I
0.935
OLONG_004226
Oryza longistaminata
OLONG_004226
I
0.935
OBART06G27230
Oryza barthii
OBART06G27230
I
0.935
LPERR06G22780
Leersia perrieri
LPERR06G22780
I
0.935
OGLUM06G28660
Oryza glumaepatula
OGLUM06G28660
I
0.935
ORUFI06G29170
Oryza rufipogon
ORUFI06G29170
I
0.935
MADS16
Oryza sativa
OS06G0712700
D
0.935
OB06G35020
Oryza brachyantha
OB06G35020
I
0.935
Pavir.Db00185
Panicum virgatum
Pavir.Db00185
I
0.935
Pavir.J11672
Panicum virgatum
Pavir.J11672
I
0.935
Sb10g029810
Sorghum bicolor
Sb10g029810
I
0.935
BGIOSGA020546
Oryza indica
BGIOSGA020546
I
0.935
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.920
Si007221m.g
Setaria italica
Si007221m.g
I
0.875
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.875
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.875
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.875
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.875
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.875
F775_30609
Aegilops tauschii
F775_30609
I
0.828
GSMUA_Achr9G20950_001
Musa acuminata
GSMUA_Achr9G20950_001
I
0.826
GSMUA_Achr9G20940_001
Musa acuminata
GSMUA_Achr9G20940_001
I
0.826
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.783
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.771
Aquca_007_00336
Aquilegia coerulea
Aquca_007_00336
I
0.771
Lus10010630.g
Linum usitatissimum
Lus10010630.g
I
0.761
Pm006266
Prunus mume
Pm006266
I
0.761
TCM_034148
Theobroma cacao
TCM_034148
I
0.761
Q40513_TOBAC
Nicotiana tabacum
Q40513_TOBAC
D
0.761
Lus10031960.g
Linum usitatissimum
Lus10031960.g
I
0.761
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.750
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.750
Cla021117
Citrullus lanatus
Cla021117
I
0.750
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.750
Ca_04909
Cicer arietinum
Ca_04909
I
0.750
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.750
AMTR_s00066p00109320
Amborella trichopoda
AMTR_s00066p00109320
I
0.750
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.750
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.750
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.750
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.750
mgf022278m
Mimulus guttatus
mgf022278m
I
0.739
evm.TU.supercontig_6.199
Carica papaya
evm.TU.supercontig_6.199
I
0.739
SELMODRAFT_450804
Selaginella moellendorffii
SELMODRAFT_450804
I
0.739
evm.TU.supercontig_6.202
Carica papaya
evm.TU.supercontig_6.202
I
0.739
SELMODRAFT_450837
Selaginella moellendorffii
SELMODRAFT_450837
I
0.739
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.729
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.729
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.729
Ciclev10002410m.g
Citrus clementina
Ciclev10002410m.g
I
0.729
orange1.1g040046m.g
Citrus sinensis
orange1.1g040046m.g
I
0.729
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.729
F775_21044
Aegilops tauschii
F775_21044
I
0.729
Aquca_006_00074
Aquilegia coerulea
Aquca_006_00074
I
0.729
SapurV1A.2002s0050
Salix purpurea
SapurV1A.2002s0050
I
0.717
SapurV1A.0569s0080
Salix purpurea
SapurV1A.0569s0080
I
0.717
29782.m000119
Ricinus communis
29782.m000119
I
0.717
Traes_5AS_029A65B0A
Triticum aestivum
Traes_5AS_029A65B0A
I
0.717
TRIUR3_09267
Triticum urartu
TRIUR3_09267
I
0.717
POPTR_0007s13660
Populus trichocarpa
POPTR_0007s13660
I
0.717
Traes_5DS_3EBE121C7
Triticum aestivum
Traes_5DS_3EBE121C7
I
0.717
TCM_000266
Theobroma cacao
TCM_000266
I
0.708
Gorai.009G271100
Gossypium raimondii
Gorai.009G271100
I
0.708
Bra014822
Brassica rapa
Bra014822
I
0.708
AP3
Arabidopsis thaliana
AT3G54340
D
0.708
Thhalv10010683m.g
Eutrema salsugineum
Thhalv10010683m.g
I
0.708
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.708
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.708
SELMODRAFT_449545
Selaginella moellendorffii
SELMODRAFT_449545
I
0.708
Bra007067
Brassica rapa
Bra007067
I
0.708
SELMODRAFT_449594
Selaginella moellendorffii
SELMODRAFT_449594
I
0.708
Bo8g083600
Brassica oleracea
Bo8g083600
I
0.708
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.708
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.708
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.708
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.708
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.708
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.708
gene14896-v1.0-hybrid
Fragaria vesca
gene14896-v1.0-hybrid
I
0.708
Bo4g120010
Brassica oleracea
Bo4g120010
I
0.708
Eucgr.F01615
Eucalyptus grandis
Eucgr.F01615
I
0.708
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.708
Aquca_006_00072
Aquilegia coerulea
Aquca_006_00072
I
0.708
Pm026712
Prunus mume
Pm026712
I
0.702