ORUFI03G41790 (Oryza rufipogon)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ORUFI03G41790 T255447_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.702 0.702
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.702 0.702
Q9LEI1_HORVU
M10984_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM7_01
0.702 0.702
MADS1
M10969_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_02
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI03G41790.1 MADS box 25 71

Links

Other MADS box family TFs
Other Oryza rufipogon TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OS03G0834466 Oryza sativa OS03G0834466 I 0.938
OBART03G39990 Oryza barthii OBART03G39990 I 0.915
OS01G0903800 Oryza sativa OS01G0903800 I 0.809
OBART01G40880 Oryza barthii OBART01G40880 I 0.787
LPERR01G34270 Leersia perrieri LPERR01G34270 I 0.766
OB01G48510 Oryza brachyantha OB01G48510 I 0.766
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.745
OBART01G39740 Oryza barthii OBART01G39740 I 0.745
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.745
MADS21 Oryza sativa OS01G0886200 I 0.745
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.745
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.745
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.745
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.745
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.745
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.745
Si002551m.g Setaria italica Si002551m.g I 0.723
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.723
Lus10009481.g Linum usitatissimum Lus10009481.g I 0.723
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.723
Sb03g042080 Sorghum bicolor Sb03g042080 I 0.723
Traes_5AS_7BFB385EF Triticum aestivum Traes_5AS_7BFB385EF I 0.702
Traes_5DS_16243E52C Triticum aestivum Traes_5DS_16243E52C I 0.702
Traes_7AS_C25A349A9 Triticum aestivum Traes_7AS_C25A349A9 I 0.702
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.702
Si019880m.g Setaria italica Si019880m.g I 0.702
Sb08g006460 Sorghum bicolor Sb08g006460 I 0.702
TRIUR3_24374 Triticum urartu TRIUR3_24374 I 0.702
Si007226m.g Setaria italica Si007226m.g I 0.702
Sb10g004390 Sorghum bicolor Sb10g004390 I 0.702
Si022981m.g Setaria italica Si022981m.g I 0.702
TRIUR3_28215 Triticum urartu TRIUR3_28215 I 0.702
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.702
MDP0000268317 Malus domestica MDP0000268317 I 0.702
Pavir.Cb01898 Panicum virgatum Pavir.Cb01898 I 0.702
Pavir.Ea01147 Panicum virgatum Pavir.Ea01147 I 0.702
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.702
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.702
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.702
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.702
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.702
Pm021962 Prunus mume Pm021962 I 0.702
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.702
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.702
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.702
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.702
POPTR_0015s14010 Populus trichocarpa POPTR_0015s14010 I 0.702
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.702
GRMZM2G160687 Zea mays GRMZM2G160687 I 0.702
OBART12G05940 Oryza barthii OBART12G05940 I 0.702
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.702
OGLUM12G07150 Oryza glumaepatula OGLUM12G07150 I 0.702
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.702
OB12G15620 Oryza brachyantha OB12G15620 I 0.702
LPERR06G03790 Leersia perrieri LPERR06G03790 I 0.702
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.702
LPERR12G05240 Leersia perrieri LPERR12G05240 I 0.702
MLOC_57890 Hordeum vulgare MLOC_57890 I 0.702
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.702
F775_30822 Aegilops tauschii F775_30822 I 0.702
OLONG_006914 Oryza longistaminata OLONG_006914 I 0.702
ORUFI12G06810 Oryza rufipogon ORUFI12G06810 I 0.702
Bra011509 Brassica rapa Bra011509 I 0.702
Bo7g116760 Brassica oleracea Bo7g116760 I 0.702
Bo1g007520 Brassica oleracea Bo1g007520 I 0.702
MADS13 Oryza sativa OS12G0207000 I 0.702
AGL16 Arabidopsis thaliana AT3G57230 D 0.702
OPUNC12G05660 Oryza punctata OPUNC12G05660 I 0.702
BRADI4G40350 Brachypodium distachyon BRADI4G40350 I 0.702
OMERI12G04040 Oryza meridionalis OMERI12G04040 I 0.702
ONIVA12G05640 Oryza nivara ONIVA12G05640 I 0.702
Bra017638 Brassica rapa Bra017638 I 0.702
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.702