PGSC0003DMG400003541 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400003541 T255602_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.854 0.854
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.771 0.771
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.771 0.771
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.771 0.771
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.750 0.750
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400009111 MADS box 10 57
PGSC0003DMT400009112 MADS box 10 57

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 1.000
AP3 Vitis vinifera VIT_18s0001g13460 I 0.875
MDP0000184294 Malus domestica MDP0000184294 I 0.854
MDP0000224779 Malus domestica MDP0000224779 I 0.854
29782.m000119 Ricinus communis 29782.m000119 I 0.854
MDP0000315938 Malus domestica MDP0000315938 I 0.854
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.854
MDP0000133037 Malus domestica MDP0000133037 I 0.854
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.854
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.854
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.833
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.833
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.833
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.833
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.833
TCM_000266 Theobroma cacao TCM_000266 I 0.833
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.833
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.833
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.833
Pm026712 Prunus mume Pm026712 I 0.833
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.833
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.833
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.812
Cla021117 Citrullus lanatus Cla021117 I 0.812
Ca_04909 Cicer arietinum Ca_04909 I 0.812
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.812
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.812
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.812
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.812
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.812
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.812
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.812
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.812
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.812
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.812
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.812
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.812
Ca_01994 Cicer arietinum Ca_01994 I 0.792
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.792
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.792
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.792
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.792
mgf015533m Mimulus guttatus mgf015533m I 0.792
Pm006266 Prunus mume Pm006266 I 0.792
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.792
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.792
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.792
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.792
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.771
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.771
AP3 Arabidopsis thaliana AT3G54340 D 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.771
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.771
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.771
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.771
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.771
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.771
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.771
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.771
TCM_034148 Theobroma cacao TCM_034148 I 0.771
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.771
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.750
TCM_035212 Theobroma cacao TCM_035212 I 0.750
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.750
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.750
OB06G35020 Oryza brachyantha OB06G35020 I 0.750
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.750
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.750
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.750
Bra014822 Brassica rapa Bra014822 I 0.750
OBART06G27230 Oryza barthii OBART06G27230 I 0.750
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.750
mgf000046m Mimulus guttatus mgf000046m I 0.750
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.750
Bo4g120010 Brassica oleracea Bo4g120010 I 0.750
Bo8g083600 Brassica oleracea Bo8g083600 I 0.750
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.750
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.750
Si007221m.g Setaria italica Si007221m.g I 0.750
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.750
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.750
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.750
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.750
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.750
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.750
29648.m001978 Ricinus communis 29648.m001978 I 0.750
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.750
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.750
Bra007067 Brassica rapa Bra007067 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.750
MADS16 Oryza sativa OS06G0712700 D 0.750
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.750
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.750
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.729
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.729
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.729
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.729
Pm004718 Prunus mume Pm004718 I 0.729
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.729
Cla023547 Citrullus lanatus Cla023547 I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
PI Vitis vinifera VIT_18s0001g01760 I 0.729
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.729
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.729
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.729
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.729
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.729
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.708