PGSC0003DMG400003709 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400003709 T255603_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.958 0.958
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.833 0.833
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.833 0.833
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.792 0.792
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.771 0.771
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.708 0.708
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.708 0.708
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.708 0.708
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400009509 MADS box 10 57
PGSC0003DMT400009510 MADS box 10 57

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 1.000
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.958
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.917
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.917
mgf000046m Mimulus guttatus mgf000046m I 0.915
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.896
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.896
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.896
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.896
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.896
Cla021117 Citrullus lanatus Cla021117 I 0.896
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.896
mgf015533m Mimulus guttatus mgf015533m I 0.896
Ca_04909 Cicer arietinum Ca_04909 I 0.896
TCM_034148 Theobroma cacao TCM_034148 I 0.875
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.875
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.875
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.875
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.854
Bra007067 Brassica rapa Bra007067 I 0.854
Bo8g083600 Brassica oleracea Bo8g083600 I 0.854
AP3 Vitis vinifera VIT_18s0001g13460 I 0.854
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.854
Bo4g120010 Brassica oleracea Bo4g120010 I 0.854
Bra014822 Brassica rapa Bra014822 I 0.854
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.854
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.833
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.833
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.833
TCM_000266 Theobroma cacao TCM_000266 I 0.833
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.833
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.833
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.833
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.833
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.833
AP3 Arabidopsis thaliana AT3G54340 D 0.833
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.812
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.812
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.812
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.812
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.812
29782.m000119 Ricinus communis 29782.m000119 I 0.812
Pm026712 Prunus mume Pm026712 I 0.809
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.792
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.792
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.792
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.792
Pm006266 Prunus mume Pm006266 I 0.792
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.792
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.792
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.792
MDP0000224779 Malus domestica MDP0000224779 I 0.792
MDP0000184294 Malus domestica MDP0000184294 I 0.792
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.792
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.792
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.792
MDP0000133037 Malus domestica MDP0000133037 I 0.792
MDP0000315938 Malus domestica MDP0000315938 I 0.792
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.792
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.771
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.771
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.771
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.771
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.771
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.771
OBART06G27230 Oryza barthii OBART06G27230 I 0.771
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.771
OB06G35020 Oryza brachyantha OB06G35020 I 0.771
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.771
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.771
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.771
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.771
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.771
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.771
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.771
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.771
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.771
MADS16 Oryza sativa OS06G0712700 D 0.771
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.771
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.771
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.771
Si007221m.g Setaria italica Si007221m.g I 0.771
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.771
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.771
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.771
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.771
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.771
F775_30609 Aegilops tauschii F775_30609 I 0.759
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.750
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.750
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.732
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.729
Cla006973 Citrullus lanatus Cla006973 I 0.729
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
Cucsa.194800 Cucumis sativus Cucsa.194800 I 0.729
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
OB02G14670 Oryza brachyantha OB02G14670 I 0.708
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.708
Bra030228 Brassica rapa Bra030228 I 0.708
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.708
Bo8g101000 Brassica oleracea Bo8g101000 I 0.708
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.708
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.708
Bra038511 Brassica rapa Bra038511 I 0.708
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.708
SVP Arabidopsis thaliana AT2G22540 D 0.708
OBART02G05380 Oryza barthii OBART02G05380 I 0.708
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.708
Bo4g149800 Brassica oleracea Bo4g149800 I 0.708
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.708
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.708
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.708
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
SVP Vitis vinifera VIT_00s0313g00070 I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
fgenesh1_pg.scaffold_267000029 Physcomitrella patens fgenesh1_pg.scaffold_267000029 I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.708
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.708
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.708
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.708
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.708
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.708
MADS29 Oryza sativa OS02G0170300 I 0.708
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.708
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.708
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.708