PGSC0003DMG400040625 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400040625 T255704_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400091054 MADS box 16 63

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.729
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.729
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.771
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.812
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.812
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.771
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.800
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.750
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708