PGSC0003DMG400043633 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400043633 T255719_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400094062 MADS box 16 63

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.938
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.938
mgf018529m Mimulus guttatus mgf018529m N 0.917
mgf024307m Mimulus guttatus mgf024307m N 0.917
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.875
Ca_26354 Cicer arietinum Ca_26354 N 0.854
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.854
Ca_07607 Cicer arietinum Ca_07607 N 0.854
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.854
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.854
29613.m000367 Ricinus communis 29613.m000367 N 0.854
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.854
30099.m001671 Ricinus communis 30099.m001671 N 0.833
MDP0000168914 Malus domestica MDP0000168914 N 0.833
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.833
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.833
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.833
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
Pm021070 Prunus mume Pm021070 N 0.833
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.812
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.812
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.812
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.812
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.812
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
TCM_040735 Theobroma cacao TCM_040735 N 0.792
TCM_006324 Theobroma cacao TCM_006324 N 0.792
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.792
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.792
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.792
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.792
Pm021018 Prunus mume Pm021018 N 0.792
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.771
Bra026764 Brassica rapa Bra026764 N 0.771
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Pm021071 Prunus mume Pm021071 N 0.771
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.771
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.771
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.750
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
MDP0000434703 Malus domestica MDP0000434703 I 0.750
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
Pm016629 Prunus mume Pm016629 N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
MDP0000233925 Malus domestica MDP0000233925 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.729
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.729
Ca_04661 Cicer arietinum Ca_04661 N 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
Bo2g024870 Brassica oleracea Bo2g024870 N 0.708
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.708
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.708
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.708
Bra035685 Brassica rapa Bra035685 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
Bra032057 Brassica rapa Bra032057 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
mgf020533m Mimulus guttatus mgf020533m N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.708
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.708
mgf024490m Mimulus guttatus mgf024490m N 0.708
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.708
mgf022403m Mimulus guttatus mgf022403m N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.708
mgf025566m Mimulus guttatus mgf025566m N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.708
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
Ca_24185 Cicer arietinum Ca_24185 I 0.708