PGSC0003DMG400045239 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400045239 T255732_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400095668 MADS box 3 51

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.812
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.750
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.750
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
Bo5g113750 Brassica oleracea Bo5g113750 N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.729
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
30099.m001672 Ricinus communis 30099.m001672 N 0.729
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.729
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
MDP0000278770 Malus domestica MDP0000278770 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.708
Pm021071 Prunus mume Pm021071 N 0.708
Pm021070 Prunus mume Pm021070 N 0.708
Pm021018 Prunus mume Pm021018 N 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.708
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708