PHUM516920 (Pediculus humanus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PHUM516920 T255764_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.979 0.979
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.979 0.979
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.938 0.938
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.938 0.938
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.938 0.938
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.938 0.938
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.938 0.938
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.938 0.938
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.938 0.938
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.938 0.938
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.938 0.938
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.938 0.938
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.938 0.938
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.938 0.938
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.938 0.938
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.938 0.938
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.938 0.938
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.938 0.938
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.938 0.938
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.938 0.938
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.938 0.938
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.938 0.938
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.938 0.938
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.938 0.938
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.917 0.917
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.833 0.833
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.750 0.750
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.750 0.750
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.750 0.750
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.750 0.750
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.750 0.750
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PHUM516920-PA MADS box 156 203

Links

Other MADS box family TFs
Other Pediculus humanus TFs

440 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL008774 Aedes aegypti AAEL008774 N 0.000
AALB005025 Anopheles albimanus AALB005025 N 0.000
Aan_R000240 Calypte anna Aan_R000240 N 0.000
AARA009353 Anopheles arabiensis AARA009353 N 0.000
AATE007240 Anopheles atroparvus AATE007240 N 0.000
ACEP15814 Atta cephalotes ACEP15814 N 0.000
ACEP25043 Atta cephalotes ACEP25043 N 0.000
ACHR000819 Anopheles christyi ACHR000819 N 0.000
ACOM031365 Anopheles coluzzii ACOM031365 N 0.000
ACUA013442 Anopheles culicifacies ACUA013442 N 0.000
ACUA027613 Anopheles culicifacies ACUA027613 N 0.000
ADAC008662 Anopheles darlingi ADAC008662 N 0.000
ADIR001615 Anopheles dirus ADIR001615 N 0.000
ADIR007854 Anopheles dirus ADIR007854 N 0.000
AEPI009272 Anopheles epiroticus AEPI009272 N 0.000
AFAF002400 Anopheles farauti AFAF002400 N 0.000
AFAF005225 Anopheles farauti AFAF005225 N 0.000
Afo_R000937 Aptenodytes forsteri Afo_R000937 N 0.000
AFUN003918 Anopheles funestus AFUN003918 N 0.000
AFUN004672 Anopheles funestus AFUN004672 N 0.000
AGAP004994 Anopheles gambiae AGAP004994 N 0.000
Alligator_sinensis_CCG008729.1 Alligator sinensis Alligator_sinensis_CCG008729.1 N 0.000
Alligator_sinensis_CCG008730.1 Alligator sinensis Alligator_sinensis_CCG008730.1 N 0.000
Alligator_sinensis_CCG019089.1 Alligator sinensis Alligator_sinensis_CCG019089.1 N 0.000
AMAM022739 Anopheles maculatus AMAM022739 N 0.000
AMAM022787 Anopheles maculatus AMAM022787 N 0.000
AMEC011358 Anopheles melas AMEC011358 N 0.000
AMEC020736 Anopheles melas AMEC020736 N 0.000
AMEM004507 Anopheles merus AMEM004507 N 0.000
AMEM016792 Anopheles merus AMEM016792 N 0.000
AMIN011106 Anopheles minimus AMIN011106 N 0.000
AMIN011476 Anopheles minimus AMIN011476 N 0.000
AQUA001970 Anopheles quadriannulatus AQUA001970 N 0.000
ASIS018279 Anopheles sinensis ASIS018279 N 0.000
ASTEI02568 Anopheles stephensi ASTEI02568 N 0.000
ASTEI10792 Anopheles stephensi ASTEI10792 N 0.000
Brh_R006141 Buceros rhinoceros Brh_R006141 N 0.000
Brh_R008651 Buceros rhinoceros Brh_R008651 N 0.000
Brh_R010138 Buceros rhinoceros Brh_R010138 N 0.000
Cflo_00612--XP_001121679.1_APIME Camponotus floridanus Cflo_00612--XP_001121679.1_APIME N 0.000
Cflo_01441--XP_624772.1_APIME Camponotus floridanus Cflo_01441--XP_624772.1_APIME N 0.000
Cflo_05095--XP_001121583.1_APIME Camponotus floridanus Cflo_05095--XP_001121583.1_APIME N 0.000
CLEC005259 Cimex lectularius CLEC005259 N 0.000
Cmyd_10014845 Chelonia mydas Cmyd_10014845 N 0.000
CPIJ003991 Culex quinquefasciatus CPIJ003991 N 0.000
CPIJ012897 Culex quinquefasciatus CPIJ012897 N 0.000
CpipJ_CPIJ003991 Culex pipiens CpipJ_CPIJ003991 N 0.000
CpipJ_CPIJ012897 Culex pipiens CpipJ_CPIJ012897 N 0.000
DAPPUDRAFT_55379 Daphnia pulex DAPPUDRAFT_55379 N 0.000
ENSAPLG00000001763 Anas platyrhynchos ENSAPLG00000001763 N 0.000
KLF4 Canis familiaris ENSCAFG00000002797 N 0.000
KLF4 Choloepus hoffmanni ENSCHOG00000000846 N 0.000
KLF8 Choloepus hoffmanni ENSCHOG00000001301 N 0.000
KLF1 Erinaceus europaeus ENSEEUG00000008498 N 0.000
KLF8 Erinaceus europaeus ENSEEUG00000014292 N 0.000
ENSFALG00000011272 Ficedula albicollis ENSFALG00000011272 N 0.000
KLF7 Homo sapiens ENSG00000118263 D 0.000
ENSMEUG00000004560 Macropus eugenii ENSMEUG00000004560 N 0.000
ENSMEUG00000010788 Macropus eugenii ENSMEUG00000010788 N 0.000
ENSMEUG00000011825 Macropus eugenii ENSMEUG00000011825 N 0.000
KLF8 Microcebus murinus ENSMICG00000001146 N 0.000
KLF4 Microcebus murinus ENSMICG00000004603 N 0.000
KLF7 Tupaia belangeri ENSTBEG00000007537 N 0.000
ENSTSYG00000005368 Tarsius syrichta ENSTSYG00000005368 N 0.000
GB45842 Apis mellifera GB45842 N 0.000
ISCW018441 Ixodes scapularis ISCW018441 N 0.000
LLOJ002499 Lutzomyia longipalpis LLOJ002499 N 0.000
LLOJ003369 Lutzomyia longipalpis LLOJ003369 N 0.000
Myotis_brandtii_Klf2_10008330 Myotis brandtii Myotis_brandtii_Klf2_10008330 N 0.000
Myotis_brandtii_Klf3_10026481 Myotis brandtii Myotis_brandtii_Klf3_10026481 N 0.000
nRc.2.0.1.g39355 Romanomermis culicivorax nRc.2.0.1.g39355 N 0.000
Ocbimv22007604m.g Octopus bimaculoides Ocbimv22007604m.g N 0.000
Ogr15320 Ophisaurus gracilis Ogr15320 N 0.000
Ogr15793 Ophisaurus gracilis Ogr15793 N 0.000
PHUM483510 Pediculus humanus PHUM483510 N 0.000
PHUM484450 Pediculus humanus PHUM484450 N 0.000
PPAI000636 Phlebotomus papatasi PPAI000636 N 0.000
RPRC002307 Rhodnius prolixus RPRC002307 N 0.000
scaffold1198-EXSNAP2012.7 Pristionchus exspectatus scaffold1198-EXSNAP2012.7 N 0.000
SINV10616 Solenopsis invicta SINV10616 N 0.000
SINV21799 Solenopsis invicta SINV21799 N 0.000
SINV23346 Solenopsis invicta SINV23346 N 0.000
Tal_R009016 Tyto alba Tal_R009016 N 0.000
Tal_R010271 Tyto alba Tal_R010271 N 0.000
TC003612 Tribolium castaneum TC003612 N 0.000
YQE_09845 Dendroctonus ponderosae YQE_09845 N 0.000
YQE_12304 Dendroctonus ponderosae YQE_12304 N 0.000