CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s25850
(
Populus trichocarpa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
POPTR_0001s25850
T255798_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s25850.1
MADS box
16
63
RIENQDDRLITFSKRRSGIYKKASELATLTGAEIAIAVFSPAGKPFSF
Links
Other
MADS box
family TFs
Other
Populus trichocarpa
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.854
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.854
29693.m002041
Ricinus communis
29693.m002041
N
0.854
29693.m002042
Ricinus communis
29693.m002042
N
0.854
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.854
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.854
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.833
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.833
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.833
Ciclev10006708m.g
Citrus clementina
Ciclev10006708m.g
N
0.833
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.833
Cla009921
Citrullus lanatus
Cla009921
N
0.833
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.812
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.812
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.812
cassava46357.m1
Manihot esculenta
cassava46357.m1
N
0.792
POPTR_0009s05050
Populus trichocarpa
POPTR_0009s05050
N
0.792
PRUPE_ppa021886mg
Prunus persica
PRUPE_ppa021886mg
N
0.792
orange1.1g038327m.g
Citrus sinensis
orange1.1g038327m.g
N
0.778
Ciclev10007010m.g
Citrus clementina
Ciclev10007010m.g
N
0.771
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.771
SapurV1A.2714s0010
Salix purpurea
SapurV1A.2714s0010
N
0.771
Pm008734
Prunus mume
Pm008734
N
0.771
PRUPE_ppa024983mg
Prunus persica
PRUPE_ppa024983mg
N
0.771
Gorai.009G284300
Gossypium raimondii
Gorai.009G284300
N
0.771
SapurV1A.1613s0060
Salix purpurea
SapurV1A.1613s0060
N
0.771
SapurV1A.0619s0200
Salix purpurea
SapurV1A.0619s0200
N
0.771
Ciclev10006500m.g
Citrus clementina
Ciclev10006500m.g
N
0.750
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.750
Ciclev10006588m.g
Citrus clementina
Ciclev10006588m.g
N
0.744
Gorai.010G132900
Gossypium raimondii
Gorai.010G132900
N
0.729
Gorai.010G133300
Gossypium raimondii
Gorai.010G133300
N
0.729
Ciclev10006740m.g
Citrus clementina
Ciclev10006740m.g
N
0.729
Ciclev10006615m.g
Citrus clementina
Ciclev10006615m.g
N
0.729
Eucgr.E02870
Eucalyptus grandis
Eucgr.E02870
N
0.729
Ciclev10006803m.g
Citrus clementina
Ciclev10006803m.g
N
0.729
Eucgr.E02872
Eucalyptus grandis
Eucgr.E02872
N
0.708
orange1.1g047467m.g
Citrus sinensis
orange1.1g047467m.g
N
0.708
Ciclev10006405m.g
Citrus clementina
Ciclev10006405m.g
N
0.708
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.708
Ciclev10006743m.g
Citrus clementina
Ciclev10006743m.g
N
0.708
orange1.1g039494m.g
Citrus sinensis
orange1.1g039494m.g
N
0.708
Gorai.010G133200
Gossypium raimondii
Gorai.010G133200
N
0.708
Ciclev10007015m.g
Citrus clementina
Ciclev10007015m.g
N
0.708
Gorai.012G147900
Gossypium raimondii
Gorai.012G147900
N
0.708
Eucgr.L01236
Eucalyptus grandis
Eucgr.L01236
N
0.708
Gorai.010G132700
Gossypium raimondii
Gorai.010G132700
N
0.708
Ciclev10006546m.g
Citrus clementina
Ciclev10006546m.g
N
0.700