AP3 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0002s02990 T255802_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.771 0.771
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.771 0.771
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.771 0.771
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s02990.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.917
mgf000046m Mimulus guttatus mgf000046m I 0.830
Pm006266 Prunus mume Pm006266 I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.792
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.792
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.792
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.792
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.792
mgf015533m Mimulus guttatus mgf015533m I 0.792
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.792
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
GRMZM2G137289 Zea mays GRMZM2G137289 I 0.792
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.792
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.792
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.771
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.771
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.771
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.771
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.771
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.771
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.771
MDP0000133037 Malus domestica MDP0000133037 I 0.771
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.771
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.771
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.771
MDP0000184294 Malus domestica MDP0000184294 I 0.771
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.771
MDP0000315938 Malus domestica MDP0000315938 I 0.771
MDP0000224779 Malus domestica MDP0000224779 I 0.771
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.771
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.771
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.771
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.771
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.771
AP3 Arabidopsis thaliana AT3G54340 D 0.771
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.771
AP3 Vitis vinifera VIT_18s0001g13460 I 0.771
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.771
Ca_04909 Cicer arietinum Ca_04909 I 0.771
Cla021117 Citrullus lanatus Cla021117 I 0.771
Pm026712 Prunus mume Pm026712 I 0.766
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.758
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.750
Ca_01994 Cicer arietinum Ca_01994 I 0.750
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.750
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.750
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.750
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.750
Bo8g083600 Brassica oleracea Bo8g083600 I 0.750
Bra007067 Brassica rapa Bra007067 I 0.750
Bra014822 Brassica rapa Bra014822 I 0.750
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.750
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.750
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.750
TCM_000266 Theobroma cacao TCM_000266 I 0.750
Bo4g120010 Brassica oleracea Bo4g120010 I 0.750
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.750
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.750
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.750
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.750
29782.m000119 Ricinus communis 29782.m000119 I 0.750
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.750
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.729
TCM_034148 Theobroma cacao TCM_034148 I 0.729
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.729
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.729
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.708